View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9919_low_3 (Length: 514)
Name: NF9919_low_3
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9919_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 21 - 494
Target Start/End: Original strand, 45282119 - 45282592
Alignment:
| Q |
21 |
tctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtgtctgatccgtctgcggtaattgtgttga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45282119 |
tctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtgtctgatccgtctgcagtaattgtgttga |
45282218 |
T |
|
| Q |
121 |
attgccctttgccaggctttctgacaatgatcgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggtaccagagacaagacaatt |
220 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
45282219 |
attgccctttgccaggctttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggtacccgagacaagacaatt |
45282318 |
T |
|
| Q |
221 |
gcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaatgcc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45282319 |
gcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgcc |
45282418 |
T |
|
| Q |
321 |
acggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaattaa |
420 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282419 |
acagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaattaa |
45282518 |
T |
|
| Q |
421 |
ttagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatg |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45282519 |
ttagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatg |
45282592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 21 - 494
Target Start/End: Original strand, 45273875 - 45274349
Alignment:
| Q |
21 |
tctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtgtctgatccgtctgcggtaattgtgttga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45273875 |
tctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtgtctgatccgtctgcggtaattgtgttga |
45273974 |
T |
|
| Q |
121 |
attgccctttgccaggctttctgacaatgatcgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggt-accagagacaagacaat |
219 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
45273975 |
attgccctttgccaggctttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggttaccagagacaagacaat |
45274074 |
T |
|
| Q |
220 |
tgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaatgc |
319 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45274075 |
tgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctacgtttctaaatgc |
45274174 |
T |
|
| Q |
320 |
cacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaatta |
419 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
45274175 |
cacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcacgcatggataatcaatta |
45274274 |
T |
|
| Q |
420 |
attagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatg |
494 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||| | | ||||||||||| ||||||| |
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|
| T |
45274275 |
attagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatg |
45274349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 24 - 463
Target Start/End: Original strand, 45293462 - 45293904
Alignment:
| Q |
24 |
gggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtgtctgatccgtctgcggtaattgtgttgaatt |
123 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| || || || ||| ||||||||||||||||||||||||| |
|
|
| T |
45293462 |
gggaacaatgctgcttctgggacaatattgcagccttggatcacaataccagtattcaatttattcacgtatgacccgtctgcggtaattgtgttgaatt |
45293561 |
T |
|
| Q |
124 |
gccctttgccaggctttctgacaatgatcgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggtaccagagacaagacaattgcg |
223 |
Q |
| |
|
| | | |||| |||| || ||||||||||||| |||||||||||| ||||||| |||||||||||| |||||||||||||||| || ||||||||| |
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|
| T |
45293562 |
gatttggggaaggcattcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcg |
45293661 |
T |
|
| Q |
224 |
gtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaatgccacg |
323 |
Q |
| |
|
|||| | || |||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
45293662 |
gtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccaca |
45293761 |
T |
|
| Q |
324 |
gcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaattaatta |
423 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
45293762 |
gcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatcaattaatta |
45293861 |
T |
|
| Q |
424 |
gtaatttcgatcacattggc---tatatatgtcaatgttatat |
463 |
Q |
| |
|
|||| |||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
45293862 |
gtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45293904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 24 - 463
Target Start/End: Original strand, 45302422 - 45302864
Alignment:
| Q |
24 |
gggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtgtctgatccgtctgcggtaattgtgttgaatt |
123 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| || || || ||| ||||||||||||||||||||||||| |
|
|
| T |
45302422 |
gggaacaatgctgcttctgggacaatattgcagccttggatcacaataccagtattcaatttattcacgtatgacccgtctgcggtaattgtgttgaatt |
45302521 |
T |
|
| Q |
124 |
gccctttgccaggctttctgacaatgatcgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggtaccagagacaagacaattgcg |
223 |
Q |
| |
|
| | | |||| |||| || ||||||||||||| |||||||||||| ||||||| |||||||||||| |||||||||||||||| || ||||||||| |
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|
| T |
45302522 |
gatttggggaaggcattcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcg |
45302621 |
T |
|
| Q |
224 |
gtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaatgccacg |
323 |
Q |
| |
|
|||| | || |||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
45302622 |
gtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccaca |
45302721 |
T |
|
| Q |
324 |
gcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaattaatta |
423 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
45302722 |
gcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatcaattaatta |
45302821 |
T |
|
| Q |
424 |
gtaatttcgatcacattggc---tatatatgtcaatgttatat |
463 |
Q |
| |
|
|||| |||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
45302822 |
gtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45302864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 138 - 450
Target Start/End: Original strand, 45270466 - 45270778
Alignment:
| Q |
138 |
tttctgacaatgatcgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggtaccagagacaagacaattgcggtagtactgtctgt |
237 |
Q |
| |
|
||||| || ||||| |||||| |||||||||||| ||||||| ||||||||||||||||| |||||| |||| || ||| ||||||||| | || |||| |
|
|
| T |
45270466 |
tttctcacgatgatggtagagctttggatcaaggtggcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgt |
45270565 |
T |
|
| Q |
238 |
tgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaatgccacggcttggtgaccatc |
337 |
Q |
| |
|
|| ||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||| | |
|
|
| T |
45270566 |
tggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatgccacagcttgcataccggc |
45270665 |
T |
|
| Q |
338 |
aggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcac |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||| || || |
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|
| T |
45270666 |
aggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttctataac |
45270765 |
T |
|
| Q |
438 |
attggctatatat |
450 |
Q |
| |
|
| |||||||||| |
|
|
| T |
45270766 |
accggctatatat |
45270778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 45270346 - 45270409
Alignment:
| Q |
24 |
gggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattca |
87 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
45270346 |
gggaccaatgctgcttctgggatgatattgcagtcctggataacaataccagtattcatattca |
45270409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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