View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9919_low_4 (Length: 429)

Name: NF9919_low_4
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9919_low_4
NF9919_low_4
[»] chr7 (17 HSPs)
chr7 (16-211)||(39329260-39329457)
chr7 (308-420)||(39329051-39329165)
chr7 (361-418)||(9450397-9450454)
chr7 (358-415)||(38798563-38798618)
chr7 (368-418)||(42978389-42978439)
chr7 (363-420)||(8013723-8013780)
chr7 (367-415)||(3224680-3224728)
chr7 (362-414)||(39171856-39171908)
chr7 (367-418)||(37837718-37837769)
chr7 (364-418)||(9915922-9915975)
chr7 (364-418)||(9923834-9923887)
chr7 (357-415)||(13797194-13797252)
chr7 (368-418)||(45350452-45350502)
chr7 (369-418)||(34899864-34899913)
chr7 (363-408)||(40992958-40993003)
chr7 (382-418)||(12141568-12141604)
chr7 (362-418)||(48317072-48317128)
[»] chr2 (17 HSPs)
chr2 (355-420)||(12677554-12677619)
chr2 (356-418)||(27097665-27097727)
chr2 (356-418)||(4778530-4778592)
chr2 (358-418)||(35220110-35220170)
chr2 (361-418)||(7646254-7646311)
chr2 (362-418)||(36943384-36943440)
chr2 (357-412)||(43397385-43397440)
chr2 (356-418)||(7448025-7448087)
chr2 (358-415)||(11985493-11985550)
chr2 (366-418)||(36691653-36691706)
chr2 (367-418)||(1421459-1421510)
chr2 (364-414)||(31788241-31788291)
chr2 (362-415)||(4098886-4098939)
chr2 (370-419)||(42698934-42698983)
chr2 (375-418)||(7678138-7678181)
chr2 (370-415)||(9169520-9169565)
chr2 (358-415)||(29279833-29279890)
[»] scaffold0088 (1 HSPs)
scaffold0088 (356-418)||(50553-50615)
[»] chr5 (12 HSPs)
chr5 (357-418)||(38597565-38597626)
chr5 (357-418)||(7035995-7036056)
chr5 (356-418)||(13006995-13007057)
chr5 (361-418)||(11977197-11977254)
chr5 (363-418)||(25979931-25979986)
chr5 (356-418)||(6012398-6012460)
chr5 (356-418)||(26825195-26825257)
chr5 (357-418)||(7929966-7930027)
chr5 (357-412)||(24230052-24230108)
chr5 (357-416)||(11074162-11074221)
chr5 (356-415)||(9113988-9114047)
chr5 (364-418)||(15571260-15571314)
[»] chr1 (14 HSPs)
chr1 (357-418)||(7337923-7337984)
chr1 (358-418)||(35484638-35484698)
chr1 (358-415)||(34878534-34878591)
chr1 (360-418)||(51916912-51916970)
chr1 (358-415)||(1742053-1742110)
chr1 (361-420)||(31983955-31984014)
chr1 (361-415)||(21947880-21947934)
chr1 (356-418)||(35462298-35462360)
chr1 (361-418)||(26535175-26535232)
chr1 (358-414)||(14872411-14872467)
chr1 (366-418)||(27456320-27456372)
chr1 (361-418)||(10776720-10776777)
chr1 (370-415)||(21686657-21686702)
chr1 (382-418)||(41176978-41177014)
[»] chr3 (25 HSPs)
chr3 (358-418)||(6954956-6955016)
chr3 (357-416)||(48650997-48651056)
chr3 (353-418)||(40487089-40487154)
chr3 (358-415)||(40556480-40556537)
chr3 (361-418)||(45568704-45568761)
chr3 (361-418)||(47895923-47895980)
chr3 (356-420)||(10108005-10108069)
chr3 (356-418)||(9998233-9998295)
chr3 (356-418)||(10232837-10232899)
chr3 (360-418)||(32701269-32701327)
chr3 (356-418)||(43488857-43488919)
chr3 (356-418)||(10229241-10229303)
chr3 (364-418)||(21431400-21431454)
chr3 (364-418)||(35865193-35865247)
chr3 (357-414)||(36910919-36910976)
chr3 (357-413)||(20988020-20988076)
chr3 (363-418)||(47042312-47042367)
chr3 (360-418)||(33579639-33579697)
chr3 (356-418)||(36461691-36461753)
chr3 (368-418)||(38545614-38545664)
chr3 (364-418)||(52923375-52923429)
chr3 (364-415)||(43016630-43016681)
chr3 (372-418)||(9797787-9797833)
chr3 (379-415)||(37040572-37040608)
chr3 (367-415)||(46220456-46220504)
[»] scaffold0127 (1 HSPs)
scaffold0127 (355-418)||(15258-15321)
[»] chr6 (11 HSPs)
chr6 (361-420)||(3913831-3913890)
chr6 (357-418)||(12170264-12170325)
chr6 (358-415)||(9723642-9723699)
chr6 (357-418)||(33053428-33053489)
chr6 (367-418)||(605983-606034)
chr6 (353-418)||(68260-68325)
chr6 (358-415)||(9719655-9719712)
chr6 (358-415)||(9721773-9721830)
chr6 (363-418)||(32328843-32328898)
chr6 (362-418)||(34018334-34018390)
chr6 (356-418)||(23128386-23128448)
[»] chr8 (12 HSPs)
chr8 (361-418)||(31013829-31013886)
chr8 (360-418)||(27110722-27110780)
chr8 (361-418)||(10377471-10377528)
chr8 (365-418)||(45446069-45446122)
chr8 (357-419)||(3673216-3673278)
chr8 (366-420)||(25191322-25191376)
chr8 (367-418)||(17693871-17693922)
chr8 (365-415)||(8412610-8412660)
chr8 (356-413)||(18537629-18537686)
chr8 (361-418)||(40211564-40211621)
chr8 (382-418)||(23230439-23230475)
chr8 (366-414)||(37971074-37971122)
[»] chr4 (19 HSPs)
chr4 (362-418)||(13633907-13633963)
chr4 (357-418)||(35348094-35348155)
chr4 (358-418)||(22610973-22611033)
chr4 (367-418)||(2520575-2520626)
chr4 (367-418)||(10496140-10496191)
chr4 (356-418)||(51024721-51024783)
chr4 (361-418)||(19853771-19853828)
chr4 (357-414)||(26633934-26633991)
chr4 (356-404)||(32766300-32766348)
chr4 (365-420)||(21686498-21686553)
chr4 (358-420)||(4143012-4143074)
chr4 (356-418)||(53810815-53810877)
chr4 (361-418)||(5119130-5119187)
chr4 (361-414)||(24099335-24099388)
chr4 (358-415)||(48257712-48257769)
chr4 (371-420)||(29961187-29961236)
chr4 (365-414)||(56156817-56156866)
chr4 (370-418)||(26091173-26091221)
chr4 (362-414)||(33920845-33920897)
[»] scaffold0026 (1 HSPs)
scaffold0026 (356-418)||(72124-72186)
[»] scaffold0087 (1 HSPs)
scaffold0087 (355-404)||(25603-25652)
[»] scaffold0017 (1 HSPs)
scaffold0017 (357-414)||(33012-33069)
[»] scaffold0219 (1 HSPs)
scaffold0219 (358-418)||(15098-15158)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 39329457 - 39329260
Alignment:
Q  16 ggtttgtcaacatattggtagtttgagtgagatgtattggatgcttatttgaggggaatgcaacattggaagttttggtctatgtatttgttatttttga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39329457 ggtttgtcaacatattggtagtttgagtgagatgtattggatgcttatttgaggggaatgcaacattggaagttttggtctacgtatttgttatttttga 39329358  T
Q  116 cgtaaaatatgacctttagagagcggtggcattatttggtgtgtaaac--nnnnnnnnnaaggattgtttgtgtgtaattgtattgtacaataatcaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||    
T  39329357 cgtaaaatatgacctttagagagcggtggcattatttggtgtgtaaactttttttttttaaggattgtttgtgtgtaattgtattgtacaataatcaa 39329260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 308 - 420
Target Start/End: Complemental strand, 39329165 - 39329051
Alignment:
Q  308 caaaacataaattatacttatcatctaattaacnnnnnnnn--ttctgatttagccggccctagttttctagtgaaagaaactccaacttttttctaaac 405  Q
    |||||| ||||||||||||||||||||||||||          |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  39329165 caaaacctaaattatacttatcatctaattaacaaaaaaaaaattctgatttagccggccctaattttctagtgagagaaactcaaacttttttctaaac 39329066  T
Q  406 tttctttctcctttg 420  Q
    |||||||||||||||    
T  39329065 tttctttctcctttg 39329051  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 9450454 - 9450397
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||    
T  9450454 cggccctaattttctagtgagagaaactccaacttctttttaaactttctttctcctt 9450397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 38798563 - 38798618
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    ||||||||||||||||||||||  |||||||||||||| | ||| |||||||||||||    
T  38798563 agccggccctagttttctagtg--agaaactccaacttctgtctgaactttctttctc 38798618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 42978389 - 42978439
Alignment:
Q  368 agttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||| |||||||| ||||| | ||||||||||||||||||||    
T  42978389 agttttctagtgagagaaactctaacttctctctaaactttctttctcctt 42978439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 8013780 - 8013723
Alignment:
Q  363 gccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctttg 420  Q
    ||||||||||| |||||| ||||||| |||||| | |||||||||||||||| |||||    
T  8013780 gccctagttttttagtgagagaaacttcaacttctctctaaactttctttcttctttg 8013723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 3224728 - 3224680
Alignment:
Q  367 tagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    ||||||| |||||| ||||| ||||||||||||||||| ||||||||||    
T  3224728 tagttttttagtgagagaaattccaacttttttctaaattttctttctc 3224680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 39171908 - 39171856
Alignment:
Q  362 ggccctagttttctagtgaaagaaactccaacttttttctaaactttctttct 414  Q
    ||||||||||||||||||| | |||||||||| | | ||||||||||||||||    
T  39171908 ggccctagttttctagtgagataaactccaacgtatctctaaactttctttct 39171856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 418
Target Start/End: Complemental strand, 37837769 - 37837718
Alignment:
Q  367 tagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||| ||| |||||||||||||| | |||||||||| |||||||||    
T  37837769 tagttttctaatgagagaaactccaacttctctctaaactttatttctcctt 37837718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 9915922 - 9915975
Alignment:
Q  364 ccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||| |||| |||||||||||| | || |||||||||||||||||    
T  9915922 ccctagttttctagagaaa-aaactccaacttctctccaaactttctttctcctt 9915975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 9923834 - 9923887
Alignment:
Q  364 ccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||| |||| |||||||||||| | || |||||||||||||||||    
T  9923834 ccctagttttctagagaaa-aaactccaacttctctccaaactttctttctcctt 9923887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Complemental strand, 13797252 - 13797194
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    ||||||| |||||||||||||||| ||||||| |||||| | | |||| ||||||||||    
T  13797252 tagccggtcctagttttctagtgagagaaacttcaacttctctttaaattttctttctc 13797194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 45350502 - 45350452
Alignment:
Q  368 agttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||| ||||||| |||||| | |||||||||| |||||||||    
T  45350502 agttttctagtgagagaaacttcaacttctctctaaactttttttctcctt 45350452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 34899913 - 34899864
Alignment:
Q  369 gttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||| |||||  |||||||||||||| | ||||||||||||||||||||    
T  34899913 gttttttagtgggagaaactccaacttctctctaaactttctttctcctt 34899864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 40992958 - 40993003
Alignment:
Q  363 gccctagttttctagtgaaagaaactccaacttttttctaaacttt 408  Q
    |||||||||||||||||  |||||||||||||| | ||||||||||    
T  40992958 gccctagttttctagtgggagaaactccaacttctctctaaacttt 40993003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 12141604 - 12141568
Alignment:
Q  382 agaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||| | ||||||||||||||||||||    
T  12141604 agaaactccaacttctctctaaactttctttctcctt 12141568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 48317128 - 48317072
Alignment:
Q  362 ggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||| |||||||| |||||||||||||| ||||| | |||||| || ||||||||||    
T  48317128 ggccttagttttcgagtgaaagaaactctaacttctctctaaatttgctttctcctt 48317072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 12677619 - 12677554
Alignment:
Q  355 tttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctttg 420  Q
    |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||    
T  12677619 tttagccggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcctttg 12677554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 27097727 - 27097665
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  27097727 ttagccggccctagttttctagtggaagaaactccaacttctctctaaactttctttctcctt 27097665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 4778530 - 4778592
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||||||    
T  4778530 ttagccggccctagttttttagtgggagaaactccaacttctttctaaactttctttctcctt 4778592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 35220110 - 35220170
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||||||||||||| |||||||||||| | | ||||||||||||||||||||    
T  35220110 agccggccctagttttctagtgagagaaactccaacctctctctaaactttctttctcctt 35220170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 7646254 - 7646311
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||  |||||||||||||| | ||||||||||||||||||||    
T  7646254 cggccctagttttctagtgggagaaactccaacttctctctaaactttctttctcctt 7646311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 36943440 - 36943384
Alignment:
Q  362 ggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||||||||| ||||||||||| || | ||||||||||||||||||||    
T  36943440 ggccctagttttctagtgagagaaactccaatttatctctaaactttctttctcctt 36943384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 412
Target Start/End: Complemental strand, 43397440 - 43397385
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttcttt 412  Q
    |||||||||||||||||||||||| |||||||||||||| | | ||||||||||||    
T  43397440 tagccggccctagttttctagtgagagaaactccaacttctctttaaactttcttt 43397385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 7448025 - 7448087
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||| |||||||||||||||||  |||||||||||||| | |||||||||||||| |||||    
T  7448025 ttagccagccctagttttctagtgggagaaactccaacttctctctaaactttctttttcctt 7448087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 11985550 - 11985493
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    ||||| ||||||||||||| ||| |||||||||||||| | |||||||||||||||||    
T  11985550 agccgtccctagttttctaatgagagaaactccaacttctctctaaactttctttctc 11985493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 36691653 - 36691706
Alignment:
Q  366 ctagttttctagtgaaagaaactccaacttt-tttctaaactttctttctcctt 418  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  36691653 ctagttttctagtgagagaaactccaactttctttctaaaccttctttctcctt 36691706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 1421459 - 1421510
Alignment:
Q  367 tagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||| |||||||||||||| |  |||||||||||||||||||    
T  1421459 tagttttctagtgagagaaactccaacttctcgctaaactttctttctcctt 1421510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 414
Target Start/End: Original strand, 31788241 - 31788291
Alignment:
Q  364 ccctagttttctagtgaaagaaactccaacttttttctaaactttctttct 414  Q
    ||||| ||||||||||| |||||||||||||| | ||||||||||||||||    
T  31788241 ccctaattttctagtgagagaaactccaacttctctctaaactttctttct 31788291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 4098886 - 4098939
Alignment:
Q  362 ggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    |||||||||||| |||||  |||||||||||||| | |||||||||||||||||    
T  4098886 ggccctagttttttagtgggagaaactccaacttctctctaaactttctttctc 4098939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 42698983 - 42698934
Alignment:
Q  370 ttttctagtgaaagaaactccaacttttttctaaactttctttctccttt 419  Q
    |||| |||||| ||||||| |||||| |||||||||||||||||||||||    
T  42698983 ttttttagtgagagaaacttcaacttctttctaaactttctttctccttt 42698934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Complemental strand, 7678181 - 7678138
Alignment:
Q  375 tagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||| |||||||||||||| | ||||||||||||||||||||    
T  7678181 tagtgagagaaactccaacttctctctaaactttctttctcctt 7678138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 9169565 - 9169520
Alignment:
Q  370 ttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    ||||||||||  |||||||||||||| | |||||||||||||||||    
T  9169565 ttttctagtgggagaaactccaacttctctctaaactttctttctc 9169520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 29279890 - 29279833
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    ||||| ||||| |||||| |||| |||||||||||||| | ||||| |||||||||||    
T  29279890 agccgaccctaattttcttgtgagagaaactccaacttctctctaacctttctttctc 29279833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 50553 - 50615
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  50553 ttagccggccctagttttctagtgggagaaactccaacttctttctaaactttctttctcctt 50615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 38597565 - 38597626
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  38597565 tagccggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcctt 38597626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 7035995 - 7036056
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||    
T  7035995 tagccggccctagttttctagtgagagaaactcaaacttctctctaaactttctttctcctt 7036056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 13006995 - 13007057
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||| |||||  |||||||||||||| | ||||||||||||||||||||    
T  13006995 ttagccggccctagttttttagtgggagaaactccaacttctctctaaactttctttctcctt 13007057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 11977254 - 11977197
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||    
T  11977254 cggccctagttttctagtgagagaaactctaacttctctctaaactttctttctcctt 11977197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 25979931 - 25979986
Alignment:
Q  363 gccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||||||||  ||||||||||||| | ||||||||||||||||||||    
T  25979931 gccctagttttctagtgagcgaaactccaacttctctctaaactttctttctcctt 25979986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 6012460 - 6012398
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||| |||||| |||||  |||||||||||||| | ||||||||||||||||||||    
T  6012460 ttagccggccccagttttttagtgggagaaactccaacttctctctaaactttctttctcctt 6012398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 26825195 - 26825257
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||| ||||||||||||||||  ||||||||||| || | ||||||||||||||||||||    
T  26825195 ttagccgaccctagttttctagtgggagaaactccaatttctctctaaactttctttctcctt 26825257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 7929966 - 7930027
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||| || ||||||||||||||| ||||||||||| || | ||||||||||||||||||||    
T  7929966 tagcctgctctagttttctagtgagagaaactccaaattctctctaaactttctttctcctt 7930027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 412
Target Start/End: Complemental strand, 24230108 - 24230052
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttct-aaactttcttt 412  Q
    |||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||    
T  24230108 tagccggccctagttttctagtgagagaaactccaacttctctctaaaactttcttt 24230052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 416
Target Start/End: Complemental strand, 11074221 - 11074162
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcc 416  Q
    |||||||| |||||| ||||  || |||||||||||||||| ||||||||||||||||||    
T  11074221 tagccggctctagttctctatggagagaaactccaacttttctctaaactttctttctcc 11074162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 415
Target Start/End: Complemental strand, 9114047 - 9113988
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    ||||||| |||||||||||||||   |||||||| ||||| | |||||||||||||||||    
T  9114047 ttagccgaccctagttttctagtaggagaaactctaacttctctctaaactttctttctc 9113988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 15571260 - 15571314
Alignment:
Q  364 ccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||||||| |||||||| ||||| | || || ||||||||||||||    
T  15571260 ccctagttttctagtgagagaaactctaacttctctccaagctttctttctcctt 15571314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 7337984 - 7337923
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||    
T  7337984 tagccggccctagttttctagtgaaagaaacttcaacttctctctaaactttctttctcctt 7337923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 35484698 - 35484638
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  35484698 agccggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcctt 35484638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 34878591 - 34878534
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    ||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||    
T  34878591 agccggccctagttttctagtgagagaaactccaacttctctttaaactttctttctc 34878534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 51916970 - 51916912
Alignment:
Q  360 ccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||| |||||| ||||||| ||| |||| ||||||||||||||||||||    
T  51916970 ccggccctagttttttagtgagagaaacttcaatttttctctaaactttctttctcctt 51916912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 1742053 - 1742110
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    |||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||    
T  1742053 agccggccttagttttctagtgagagaaactcaaacttctttctaaacttcctttctc 1742110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 420
Target Start/End: Original strand, 31983955 - 31984014
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctttg 420  Q
    ||||||||| ||| |||||| |||||||||||||| | |||||||||||||||| |||||    
T  31983955 cggccctagatttttagtgagagaaactccaacttctctctaaactttctttcttctttg 31984014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 21947934 - 21947880
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    ||||| |||||||||||||| ||||||| ||| |||| |||||||||||||||||    
T  21947934 cggccttagttttctagtgagagaaacttcaatttttctctaaactttctttctc 21947880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 35462360 - 35462298
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||| ||||||| |||||  |||||||| ||||| | ||||||||||||||||||||    
T  35462360 ttagccggccttagttttttagtgggagaaactctaacttatctctaaactttctttctcctt 35462298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 26535175 - 26535232
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||| |||||||||||||| |||||||| ||||| | |||||||||||| |||||||    
T  26535175 cggccttagttttctagtgagagaaactctaacttctctctaaactttctctctcctt 26535232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 14872411 - 14872467
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttct 414  Q
    ||||| || ||||||| |||||| |||||||||||||| ||||| ||||||||||||    
T  14872411 agccgcccttagttttttagtgagagaaactccaacttctttctgaactttctttct 14872467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 27456320 - 27456372
Alignment:
Q  366 ctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||| |||||| | ||||| |||||| ||||||||||||||||||||||    
T  27456320 ctagttttttagtgagaaaaacttcaacttctttctaaactttctttctcctt 27456372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 10776777 - 10776720
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||| |||||||| ||| || ||||||||||| || | ||||||||||||||||||||    
T  10776777 cggcactagttttttagggagagaaactccaatttctctctaaactttctttctcctt 10776720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 21686657 - 21686702
Alignment:
Q  370 ttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    |||| |||||| ||||||| ||||||||||||||| ||||||||||    
T  21686657 ttttttagtgagagaaactgcaacttttttctaaattttctttctc 21686702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 41176978 - 41177014
Alignment:
Q  382 agaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||| | ||||||||||||||||||||    
T  41176978 agaaactccaacttctctctaaactttctttctcctt 41177014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 6955016 - 6954956
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  6955016 agccggccctagttttctagtggaagaaactccaacttctctctaaactttctttctcctt 6954956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 357 - 416
Target Start/End: Complemental strand, 48651056 - 48650997
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcc 416  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  48651056 tagcccgccctagttttctagtgaaagaaactccaacttctctctaaactttctttctcc 48650997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 40487089 - 40487154
Alignment:
Q  353 gatttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||| |||||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  40487089 gatttagtcggccctaattttctagtgagagaaactccaacttctctctaaactttctttctcctt 40487154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 40556480 - 40556537
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||    
T  40556480 agccggccctagttttctagtgggagaaactccaacttctttctaaactttctttctc 40556537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 45568761 - 45568704
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  45568761 cggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcctt 45568704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 47895923 - 47895980
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  47895923 cggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcctt 47895980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 10108005 - 10108069
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctttg 420  Q
    ||||||| ||||||||||||||||  |||||||||||||| | ||||||||||||||||||||||    
T  10108005 ttagccgaccctagttttctagtgggagaaactccaacttctctctaaactttctttctcctttg 10108069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 9998233 - 9998295
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||| ||||||||||||||||  |||||||||||||| | ||||||||||||||||||||    
T  9998233 ttagccgaccctagttttctagtgggagaaactccaacttctctctaaactttctttctcctt 9998295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 10232837 - 10232899
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||| ||||||||||||||||  |||||||||||||| | ||||||||||||||||||||    
T  10232837 ttagccgaccctagttttctagtgggagaaactccaacttctctctaaactttctttctcctt 10232899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 32701269 - 32701327
Alignment:
Q  360 ccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||    
T  32701269 ccggccctagttttctagtggaagaaactccaacttctctttaaactttctttctcctt 32701327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 43488919 - 43488857
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||| |||||| ||||||| |||||| | ||||||||||||||||||||    
T  43488919 ttagccggccctagttttttagtgagagaaacttcaacttctctctaaactttctttctcctt 43488857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 10229241 - 10229303
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||| ||||||||||||||||  ||||||||||| || | ||||||||||||||||||||    
T  10229241 ttagccgaccctagttttctagtgggagaaactccaatttctctctaaactttctttctcctt 10229303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 21431400 - 21431454
Alignment:
Q  364 ccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||||||  |||||||||||||| | ||||||||||||||||||||    
T  21431400 ccctagttttctagtgggagaaactccaacttctctctaaactttctttctcctt 21431454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 35865247 - 35865193
Alignment:
Q  364 ccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||||||| ||||||| |||||| | ||||||||||||||||||||    
T  35865247 ccctagttttctagtgagagaaacttcaacttctctctaaactttctttctcctt 35865193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 36910976 - 36910919
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttct 414  Q
    |||||||||||||||||||||||| |||||||||||||| | | |||||||| |||||    
T  36910976 tagccggccctagttttctagtgagagaaactccaacttctctataaactttttttct 36910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 20988076 - 20988020
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttc 413  Q
    ||||||||||||||||| |||||| |||||||||||||| | ||||||||| |||||    
T  20988076 tagccggccctagttttttagtgagagaaactccaacttctctctaaacttcctttc 20988020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 47042367 - 47042312
Alignment:
Q  363 gccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||| |||||||||||||||||||||||||| | |||||||||| ||| |||||    
T  47042367 gccctaattttctagtgaaagaaactccaacttctctctaaactttatttatcctt 47042312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 33579639 - 33579697
Alignment:
Q  360 ccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||| |||||||||||| ||||||| |||||| | |||||||||||||| |||||    
T  33579639 ccggcccttgttttctagtgagagaaacttcaacttctctctaaactttctttatcctt 33579697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 36461753 - 36461691
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||||||||||||||  ||||||| ||  || | ||||||||||||||||||||    
T  36461753 ttagccggccctagttttctagtgtgagaaacttcatattctctctaaactttctttctcctt 36461691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 38545614 - 38545664
Alignment:
Q  368 agttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||| ||||||| |||||| | ||||||||||||||||||||    
T  38545614 agttttctagtgagagaaacttcaacttctctctaaactttctttctcctt 38545664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 52923429 - 52923375
Alignment:
Q  364 ccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||| |||| ||||| ||||||||||||||| | ||||||||||||||||||||    
T  52923429 ccctatttttttagtggaagaaactccaacttctctctaaactttctttctcctt 52923375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 415
Target Start/End: Original strand, 43016630 - 43016681
Alignment:
Q  364 ccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    ||||||||||||||||| |||||||| ||||| | |||||| ||||||||||    
T  43016630 ccctagttttctagtgagagaaactctaacttctctctaaattttctttctc 43016681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 9797833 - 9797787
Alignment:
Q  372 ttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||| |||||||||||||| | |||||||||| |||||||||    
T  9797833 ttctagtgagagaaactccaacttctctctaaactttatttctcctt 9797787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 37040572 - 37040608
Alignment:
Q  379 gaaagaaactccaacttttttctaaactttctttctc 415  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  37040572 gaaagaaactcaaacttctttctaaactttctttctc 37040608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 46220456 - 46220504
Alignment:
Q  367 tagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    |||||||||||||| |||||||  ||||| | |||||||||||||||||    
T  46220456 tagttttctagtgatagaaactataacttctctctaaactttctttctc 46220504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 15258 - 15321
Alignment:
Q  355 tttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||||||||||    
T  15258 tttagccggccctagttttctagtgagagaaacttcaacttctctctaaactttctttctcctt 15321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 3913890 - 3913831
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctttg 420  Q
    |||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||    
T  3913890 cggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcctttg 3913831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 12170264 - 12170325
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||||||| |||||||||||||| | |||| |||||||||||||||    
T  12170264 tagccggccctagttttctagtgagagaaactccaacttctctctagactttctttctcctt 12170325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 9723699 - 9723642
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    |||| ||| ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  9723699 agcctgccatagttttctagtgaaagaaactccaacttctctctaaactttctttctc 9723642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 33053489 - 33053428
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||| ||||||||||||||||  |||||||||||||| | ||||||||||||||||||||    
T  33053489 tagccgaccctagttttctagtgggagaaactccaacttctctctaaactttctttctcctt 33053428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 605983 - 606034
Alignment:
Q  367 tagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  605983 tagttttctagtgggagaaactccaacttttctctaaactttctttctcctt 606034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 68325 - 68260
Alignment:
Q  353 gatttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||| |||||||||||||||| ||||   |||||||||||||| | ||||||||||||||||||||    
T  68325 gattaagccggccctagttttttagtaggagaaactccaacttctctctaaactttctttctcctt 68260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 9719712 - 9719655
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    |||||||| ||||||||| |||| |||||||||||||| | |||||||||||||||||    
T  9719712 agccggccatagttttcttgtgagagaaactccaacttctctctaaactttctttctc 9719655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 9721830 - 9721773
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    |||||||| || ||||||||||| |||||||||||||| | |||||||||||||||||    
T  9721830 agccggccataattttctagtgagagaaactccaacttctctctaaactttctttctc 9721773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 32328898 - 32328843
Alignment:
Q  363 gccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||| |||||||| ||||| | |||| |||||||||||||||    
T  32328898 gccctagttttctagtgagagaaactctaacttctctctatactttctttctcctt 32328843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 34018334 - 34018390
Alignment:
Q  362 ggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||| ||||| |||| || ||| |||| ||||||||||||||||||||    
T  34018334 ggccctagttttccagtgagagaagcttcaatttttgtctaaactttctttctcctt 34018390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 23128386 - 23128448
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||  ||||| ||||||||  |||||||| ||||| | ||||||||||||||||||||    
T  23128386 ttagccggttctagtattctagtgggagaaactctaacttctctctaaactttctttctcctt 23128448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 31013886 - 31013829
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  31013886 cggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcctt 31013829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 27110780 - 27110722
Alignment:
Q  360 ccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||| ||||||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  27110780 ccggcgctagttttctagtgagagaaactccaacttctctctaaactttctttctcctt 27110722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 10377471 - 10377528
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||  |||||||||||||| | ||||||||||||||||||||    
T  10377471 cggccctagttttctagtgggagaaactccaacttctctctaaactttctttctcctt 10377528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 45446122 - 45446069
Alignment:
Q  365 cctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  45446122 cctagttttctagtgagagaaactccaacttctctctaaactttctttctcctt 45446069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 3673216 - 3673278
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctccttt 419  Q
    ||||||||| |||| |||| |||||||||||| |||||| | |||||||||||||||||||||    
T  3673216 tagccggccttagtattctggtgaaagaaacttcaacttctctctaaactttctttctccttt 3673278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 366 - 420
Target Start/End: Complemental strand, 25191376 - 25191322
Alignment:
Q  366 ctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctttg 420  Q
    |||||||| |||||| |||||||||||||| | ||||||||||||||||||||||    
T  25191376 ctagttttttagtgagagaaactccaacttctctctaaactttctttctcctttg 25191322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 418
Target Start/End: Complemental strand, 17693922 - 17693871
Alignment:
Q  367 tagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||| |||||| |||||||||||||| | ||||||||||||||||||||    
T  17693922 tagttttttagtgagagaaactccaacttctctctaaactttctttctcctt 17693871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 415
Target Start/End: Complemental strand, 8412660 - 8412610
Alignment:
Q  365 cctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    |||||||||||||||| |||||||| ||||| | |||||||||||||||||    
T  8412660 cctagttttctagtgagagaaactctaacttctctctaaactttctttctc 8412610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 18537686 - 18537629
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttc 413  Q
    ||||||| ||| |||||| |||||| ||||||| |||||||| |||||||||||||||    
T  18537686 ttagccgccccgagttttttagtgagagaaacttcaacttttctctaaactttctttc 18537629  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 40211621 - 40211564
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||| |||||||||||||| ||||||||||| || | | |||| |||||||||||||    
T  40211621 cggccttagttttctagtgagagaaactccaatttctctttaaaatttctttctcctt 40211564  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 23230439 - 23230475
Alignment:
Q  382 agaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||| | ||||||||||||||||||||    
T  23230439 agaaactccaacttctctctaaactttctttctcctt 23230475  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 414
Target Start/End: Original strand, 37971074 - 37971122
Alignment:
Q  366 ctagttttctagtgaaagaaactccaacttttttctaaactttctttct 414  Q
    ||||||||||| ||| |||||||||||||| | |||||| |||||||||    
T  37971074 ctagttttctaatgagagaaactccaacttctctctaaattttctttct 37971122  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 13633907 - 13633963
Alignment:
Q  362 ggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  13633907 ggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcctt 13633963  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 35348094 - 35348155
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||| |||||||||||||||||||||||||||||||| | | |||||||| |||||||||    
T  35348094 tagccgcccctagttttctagtgaaagaaactccaacttctctttaaactttttttctcctt 35348155  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 22610973 - 22611033
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||| |||||  |||||||||||||| | ||||||||||||||||||||    
T  22610973 agccggccctagttttttagtgggagaaactccaacttctctctaaactttctttctcctt 22611033  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 2520575 - 2520626
Alignment:
Q  367 tagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  2520575 tagttttctagtgagagaaactccaacttctctctaaactttctttctcctt 2520626  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 10496140 - 10496191
Alignment:
Q  367 tagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  10496140 tagttttctagtgagagaaactccaacttctttctaaactttcttactcctt 10496191  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 51024783 - 51024721
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||| ||||| ||||| |||||||||||||| | |||| |||||||||||||||    
T  51024783 ttagccggccctaattttccagtgagagaaactccaacttctctctatactttctttctcctt 51024721  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 19853828 - 19853771
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||  |||||||||||||| | ||||||||||||||| ||||    
T  19853828 cggccctagttttctagtgggagaaactccaacttctctctaaactttctttcccctt 19853771  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 26633991 - 26633934
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttct 414  Q
    ||||||| ||||||||| |||||| |||||||||||||| | ||||||||||||||||    
T  26633991 tagccggtcctagttttttagtgagagaaactccaacttctctctaaactttctttct 26633934  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 32766300 - 32766348
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaa 404  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||||||||    
T  32766300 ttagccgaccctagttttctagtggaagaaactccaacttctttctaaa 32766348  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 420
Target Start/End: Complemental strand, 21686553 - 21686498
Alignment:
Q  365 cctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctttg 420  Q
    |||||||||||||||| |||||||  ||||| | ||||||||||||||||||||||    
T  21686553 cctagttttctagtgagagaaactttaacttctctctaaactttctttctcctttg 21686498  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 4143074 - 4143012
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctttg 420  Q
    ||||| |||||||||| |||||  |||||||||||||| | | ||||||||||||||||||||    
T  4143074 agccgaccctagttttttagtgggagaaactccaacttctctataaactttctttctcctttg 4143012  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 53810815 - 53810877
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||| |||||||||||||||||  |||||||||| ||| | ||||||||||||| ||||||    
T  53810815 ttagccagccctagttttctagtgggagaaactccagcttctctctaaactttcttcctcctt 53810877  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 5119130 - 5119187
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||||||||||||||||||| | ||| | |||||| |||||||||||| |||||||||    
T  5119130 cggccctagttttctagtgagataaatttcaacttctttctaaactttatttctcctt 5119187  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 24099388 - 24099335
Alignment:
Q  361 cggccctagttttctagtgaaagaaactccaacttttttctaaactttctttct 414  Q
    ||||||||||||||||||||||||||||  || || | ||||||||||||||||    
T  24099388 cggccctagttttctagtgaaagaaactttaaattctctctaaactttctttct 24099335  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 48257769 - 48257712
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctc 415  Q
    ||||| ||||||||||||||||| | |||||||||||| | | |||||||||||||||    
T  48257769 agccgaccctagttttctagtgagaaaaactccaacttctctttaaactttctttctc 48257712  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 29961236 - 29961187
Alignment:
Q  371 tttctagtgaaagaaactccaacttttttctaaactttctttctcctttg 420  Q
    |||||| ||| |||||||||||||| | |||||||||||||| |||||||    
T  29961236 tttctaatgagagaaactccaacttctctctaaactttctttttcctttg 29961187  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 56156866 - 56156817
Alignment:
Q  365 cctagttttctagtgaaagaaactccaacttttttctaaactttctttct 414  Q
    ||||||||| || ||| |||||||||||||| | ||||||||||||||||    
T  56156866 cctagttttttattgagagaaactccaacttctctctaaactttctttct 56156817  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 26091221 - 26091173
Alignment:
Q  370 ttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    |||| |||||| |||||||||||||| | ||||||| ||||||||||||    
T  26091221 ttttttagtgagagaaactccaacttctctctaaaccttctttctcctt 26091173  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 33920845 - 33920897
Alignment:
Q  362 ggccctagttttctagtgaaagaaactccaacttttttctaaactttctttct 414  Q
    |||| ||||||| |||||| ||||||| ||||||||  |||||||||||||||    
T  33920845 ggccttagttttttagtgagagaaacttcaacttttccctaaactttctttct 33920897  T

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Target: scaffold0026 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 72186 - 72124
Alignment:
Q  356 ttagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||||||||||||||||||||||  ||||||| |||||| | ||||||||||||||||||||    
T  72186 ttagccggccctagttttctagtgggagaaacttcaacttctctctaaactttctttctcctt 72124  T

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Target: scaffold0087 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 25652 - 25603
Alignment:
Q  355 tttagccggccctagttttctagtgaaagaaactccaacttttttctaaa 404  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  25652 tttagccggccctagttttctagtgagagaaacttcaacttttctctaaa 25603  T

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Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 33069 - 33012
Alignment:
Q  357 tagccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttct 414  Q
    ||||| |||||||||||||||||| |||||||| ||||| | ||||||||||||||||    
T  33069 tagcccgccctagttttctagtgagagaaactctaacttctctctaaactttctttct 33012  T

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Target: scaffold0219 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 15158 - 15098
Alignment:
Q  358 agccggccctagttttctagtgaaagaaactccaacttttttctaaactttctttctcctt 418  Q
    ||||| |||||| |||||||||| ||||||||||| || | ||||||||||||||||||||    
T  15158 agccgaccctagatttctagtgagagaaactccaatttctctctaaactttctttctcctt 15098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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