View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9919_low_5 (Length: 426)
Name: NF9919_low_5
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9919_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 31 - 411
Target Start/End: Complemental strand, 25322845 - 25322465
Alignment:
| Q |
31 |
tataagtttgatcttaggaagaagattaaccggtgttcgtgtaccattcttttctaaagctaataattcagtatccagtgcttgaatccatgttcagatt |
130 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25322845 |
tataagtttgatcttaggacgaagattaaccggtgttcgtgtaccattcttttctaaagccaataattcagtatccagtgcttgaatccatgttcagatt |
25322746 |
T |
|
| Q |
131 |
gcaaacataatctatatgtttggcgataagtgtacaacattgtagattgaatgtaattgaaatgaaaaaattaacactataacacacttaaatttacact |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
25322745 |
gcaaacataatctatatgtttggcgataagtgtacaacattgtagattgaatgtaattgaaatgaaaaaattacaactataacacactgaaatttacact |
25322646 |
T |
|
| Q |
231 |
gaaataagagtgaagaaaatggtatacaaattcacattgttacatacatatcaagctcctgcatcggcatcacgatctgtaaagaaagaaccactgctac |
330 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25322645 |
gaaataagagtgaagaaaacggtatacaaattcactttgttatatacatatcaagctcctgcatcggcatcacgatctgtaaagaaagaaccactgctac |
25322546 |
T |
|
| Q |
331 |
atcttctatcactaaaagaaaatgttgatgatgatggtgacgatgatgaattaccattagaagaagaaaccaaaggaacac |
411 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25322545 |
atcttctatcactaaaggaaaatgttgatgatgatggtgacgatgatgaattaccattagaagaagaaaccaaaggaacac |
25322465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 31 - 411
Target Start/End: Complemental strand, 26152538 - 26152158
Alignment:
| Q |
31 |
tataagtttgatcttaggaagaagattaaccggtgttcgtgtaccattcttttctaaagctaataattcagtatccagtgcttgaatccatgttcagatt |
130 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26152538 |
tataagtttgatcttaggacgaagattaaccggtgttcgtgtaccattcttttctaaagccaataattcagtatccagtgcttgaatccatgttcagatt |
26152439 |
T |
|
| Q |
131 |
gcaaacataatctatatgtttggcgataagtgtacaacattgtagattgaatgtaattgaaatgaaaaaattaacactataacacacttaaatttacact |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
26152438 |
gcaaacataatctatatgtttggcgataagtgtacaacattgtagattgaatgtaattgaaatgaaaaaattacaactataacacactgaaatttacact |
26152339 |
T |
|
| Q |
231 |
gaaataagagtgaagaaaatggtatacaaattcacattgttacatacatatcaagctcctgcatcggcatcacgatctgtaaagaaagaaccactgctac |
330 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26152338 |
gaaataagagtgaagaaaacggtatacaaattcactttgttatatacatatcaagctcctgcatcggcatcacgatctgtaaagaaagaaccactgctac |
26152239 |
T |
|
| Q |
331 |
atcttctatcactaaaagaaaatgttgatgatgatggtgacgatgatgaattaccattagaagaagaaaccaaaggaacac |
411 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26152238 |
atcttctatcactaaaggaaaatgttgatgatgatggtgacgatgatgaattaccattagaagaagaaaccaaaggaacac |
26152158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 252 - 364
Target Start/End: Complemental strand, 25989967 - 25989855
Alignment:
| Q |
252 |
gtatacaaattcacattgttacatacatatcaagctcctgcatcggcatcacgatctgtaaagaaagaaccactgctacatcttctatcactaaaagaaa |
351 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
25989967 |
gtatacaaattcacattgttatgaacatatcatgctcctgcatctgcatcacgatccgtaaagaaagaaccactcttacatcttctgtcactaaaagaaa |
25989868 |
T |
|
| Q |
352 |
atgttgatgatga |
364 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25989867 |
atgttgatgatga |
25989855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 364
Target Start/End: Original strand, 25324397 - 25324487
Alignment:
| Q |
274 |
atacatatcaagctcctgcatcggcatcacgatctgtaaagaaagaaccactgctacatcttctatcactaaaagaaaatgttgatgatga |
364 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
25324397 |
atacatttcaagctcctgcatctgcatcacgatctgtaaagaaagaaccactgctacatcttctgtctctaaaagaaaatgttgatgatga |
25324487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 364
Target Start/End: Original strand, 26154090 - 26154180
Alignment:
| Q |
274 |
atacatatcaagctcctgcatcggcatcacgatctgtaaagaaagaaccactgctacatcttctatcactaaaagaaaatgttgatgatga |
364 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
26154090 |
atacatttcaagctcctgcatctgcatcacgatctgtaaagaaagaaccactgctacatcttctgtctctaaaagaaaatgttgatgatga |
26154180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 25990037 - 25989972
Alignment:
| Q |
135 |
acataatctatatgtttggcgataagtgtacaacattgtagattgaatgtaattgaaatgaaaaaa |
200 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25990037 |
acataatgtatatatttggcgataagtgtacaacattgtagattgaatgtaattgaaatgaaaaaa |
25989972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 25435032 - 25434967
Alignment:
| Q |
299 |
atcacgatctgtaaagaaagaaccactgctacatcttctatcactaaaagaaaatgttgatgatga |
364 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
25435032 |
atcacggtctgtaaagaaatcaccactgctacatcttctggtactaaaaaaaaatggtgatgatga |
25434967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 411
Target Start/End: Complemental strand, 25442879 - 25442840
Alignment:
| Q |
372 |
gatgatgaattaccattagaagaagaaaccaaaggaacac |
411 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
25442879 |
gatgatgagttaccattggaagaagaaaccaaaggaacac |
25442840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 25442928 - 25442873
Alignment:
| Q |
311 |
aaagaaagaaccactgctacatcttctatcactaaaagaaaatgttgatgatgatg |
366 |
Q |
| |
|
|||||||||| || |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25442928 |
aaagaaagaatcagcgctacatcttctggtactaaaagaaaatgttgatgatgatg |
25442873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University