View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9919_low_7 (Length: 384)
Name: NF9919_low_7
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9919_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 6877186 - 6876957
Alignment:
| Q |
15 |
ggtaatcaatacaccgattatgctaaataatccattatcattttttaaacaacattaaacattagttcattaattaaaatacattaagcatctatgaatg |
114 |
Q |
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| T |
6877186 |
ggtaatcaatacaccgattatactaaataatccaatatcattttttaaacaacatta-------gttcattaattaaaatacattaagcatctatgaatg |
6877094 |
T |
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| Q |
115 |
ataacttaattgttctcattaccgtcaaatgggtggatatcatataatatgttaaagaaaatgttaacagtatattcgaccatactttttaaagatcata |
214 |
Q |
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| T |
6877093 |
ataacttaattgttctcattaccgtcaaatgggtggatatcatataatatgttaaagaaaatgttaacagtatattcgacgatactttttaaagaccata |
6876994 |
T |
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| Q |
215 |
actaataaatttttataaaagaattgtgtattcaatgc |
252 |
Q |
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| T |
6876993 |
actaataagttttta-aaaataattgtatattcaatgc |
6876957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 324 - 367
Target Start/End: Complemental strand, 6876885 - 6876842
Alignment:
| Q |
324 |
gagacactcgttagcgaaacttctatgttatttgtttaaacttt |
367 |
Q |
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| T |
6876885 |
gagacactcgttagcgaaacttctatgttgtttgtttaaacttt |
6876842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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