View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9919_low_9 (Length: 349)
Name: NF9919_low_9
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9919_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 7629912 - 7629594
Alignment:
| Q |
18 |
ccatgatgttatccttaacaatatactcatgtcttatattacctcaaaaatattcatatataatcgatctacatatatgtccttccaagcctcaacgtat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7629912 |
ccatgatgttatccttaacaatatactcatgtcttatattacctcaaaaatattcatatataatcgatctacataaatgtccttccaagcctcaacgtat |
7629813 |
T |
|
| Q |
118 |
aaaataaaataacctgaaataatttaatgggtgccgtccgagttctctcctccgatacaatcaaggcaccaaaatcaagtgaccaaacaatccatttgac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7629812 |
aaaataaaataacctgaaataatttaatgggtgacgtccgagttctctcctccgatacaatcaaggcaccaaaatcaagtgaccaaacaatccatttgac |
7629713 |
T |
|
| Q |
218 |
tccatgggatctccgctttctacttgtttcaaccaacaaaaagggccttctttatcgccatccggttgtagcaacccaaatccaacggctgagacactct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7629712 |
tccatgggatctccgctttctacttgtttcaaccaacaaaaagggccttctttatcgccatccggttgtagcaacccaaatccaacggctgagacactct |
7629613 |
T |
|
| Q |
318 |
ctatcctctgccctttcct |
336 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7629612 |
ctatcctctgccctttcct |
7629594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 49 - 336
Target Start/End: Complemental strand, 7607491 - 7607209
Alignment:
| Q |
49 |
tcttatattacctcaaaaatattcatatataatcgatctacatatatgtccttccaagcctcaacgtataaaataaaataacctgaaataatttaatggg |
148 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
7607491 |
tcttatattacctcaaaaatattcttatataatcgatctacatatatgtccttccaagcctcaatgtataaa-----ataacctgaaataatttaatggg |
7607397 |
T |
|
| Q |
149 |
tgccgtccgagttctctcctccgatacaatcaaggcaccaaaatcaagtgaccaaacaatccatttgactccatgggatctccgctttctacttgtttca |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7607396 |
tgccgtccgagttctctcctccgatacaatcaaggcaccaaaatcaagtgatcaaacaatccatttgactccatgggatctccgttttctacttgtttca |
7607297 |
T |
|
| Q |
249 |
accaacaaaaagggccttctttatcgccatccggttgtagcaacccaaatccaacggctgagacactctctatcctctgccctttcct |
336 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7607296 |
accaacaaaaagggccttctttatcatcatccggtggttgcaacccaaatccaacggttgagacactctctatcctctgccctttcct |
7607209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 156 - 332
Target Start/End: Complemental strand, 7638220 - 7638044
Alignment:
| Q |
156 |
cgagttctctcctccgatacaatcaaggcaccaaaatcaagtgaccaaacaatccatttgactccatgggatctccgctttctacttgtttcaaccaaca |
255 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
7638220 |
cgagttctctccaccgatacaatcaaggcaccaaaatcaagtgagcaaacaatccatttgactccatgggatctccggtatctacttgttttaaccaaca |
7638121 |
T |
|
| Q |
256 |
aaaagggccttctttatcgccatccggttgtagcaacccaaatccaacggctgagacactctctatcctctgccctt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
7638120 |
aaaagggccttctttatcgccatccggttgtagctaaccaaatccaacggctgagacactctctgtcctcagccctt |
7638044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 151 - 332
Target Start/End: Complemental strand, 7616390 - 7616209
Alignment:
| Q |
151 |
ccgtccgagttctctcctccgatacaatcaaggcaccaaaatcaagtgaccaaacaatccatttgactccatgggatctccgctttctacttgtttcaac |
250 |
Q |
| |
|
|||| ||||||||||| | |||||||| |||||||||||||||||| | ||||| || |||||||||||||||||||||| |||||||||| | |||| |
|
|
| T |
7616390 |
ccgtgcgagttctctctactgatacaattaaggcaccaaaatcaagtaatcaaactattgatttgactccatgggatctccggtttctacttggtacaac |
7616291 |
T |
|
| Q |
251 |
caacaaaaagggccttctttatcgccatccggttgtagcaacccaaatccaacggctgagacactctctatcctctgccctt |
332 |
Q |
| |
|
|||| |||||| |||||||||| |||||| |||| ||| | ||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
7616290 |
caacccaaagggtcttctttatcaccatccagttgaagctaaccaaatccaacggctgagacactctttgtcctctgccctt |
7616209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 144 - 336
Target Start/End: Original strand, 7655094 - 7655286
Alignment:
| Q |
144 |
atgggtgccgtccgagttctctcctccgatacaatcaaggcaccaaaatcaagtgaccaaacaatccatttgactccatgggatctccgctttctacttg |
243 |
Q |
| |
|
|||||||| ||| ||| |||||| || |||||||||||||| ||||||||| | || | |||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
7655094 |
atgggtgcattccaagtactctccaccaatacaatcaaggcattgaaatcaagtaatcataaaatcgatttaactccatgggatctccaatttctacttt |
7655193 |
T |
|
| Q |
244 |
tttcaaccaacaaaaagggccttctttatcgccatccggttgtagcaacccaaatccaacggctgagacactctctatcctctgccctttcct |
336 |
Q |
| |
|
| ||||||| ||||| ||||||||||||| |||||| | | | || |||||| |||||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
7655194 |
atccaaccaataaaaaaggccttctttatcaccatcctttagcatcagaccaaattcaacggctgacacactctttatcctcagccctttcct |
7655286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 7607572 - 7607538
Alignment:
| Q |
18 |
ccatgatgttatccttaacaatatactcatgtctt |
52 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
7607572 |
ccatgatgttatccttaacaatattctcatgtctt |
7607538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 151 - 322
Target Start/End: Original strand, 8935062 - 8935233
Alignment:
| Q |
151 |
ccgtccgagttctctcctccgatacaatcaaggcaccaaaatcaagtgaccaaacaatccatttgactccatgggatctccgctttctacttgtttcaac |
250 |
Q |
| |
|
|||| ||||||||||| | |||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||||||||| | |||||| || |||| |
|
|
| T |
8935062 |
ccgtacgagttctctctactgatacaattaaggcaacaaaatcaagtgatcaaacgatccatttgactccatgggatctccggtcactacttattccaac |
8935161 |
T |
|
| Q |
251 |
caacaaaaagggccttctttatcgccatccggttgtagcaacccaaatccaacggctgagacactctctatc |
322 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
8935162 |
caacaaaaagggccttttttatcaccatccggttgtatctaaccaaatccaacggctgagacactctctatc |
8935233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 322
Target Start/End: Original strand, 8934207 - 8934292
Alignment:
| Q |
237 |
ctacttgtttcaaccaacaaaaagggccttctttatcgccatccggttgtagcaacccaaatccaacggctgagacactctctatc |
322 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| ||||||||||||| | | ||||||||||| ||| |||||||||||||| |
|
|
| T |
8934207 |
ctacttattccaaccaacaaaaagggccttctttattaccatccggttgtatctaaccaaatccaacagctaagacactctctatc |
8934292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 8932892 - 8932953
Alignment:
| Q |
171 |
gatacaatcaaggcaccaaaatcaagtgaccaaacaatccatttgactccatgggatctccg |
232 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
8932892 |
gatacaattaaggcaacaaaatcaagtgatcaaacaatccatttgactccattggatctccg |
8932953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 332
Target Start/End: Original strand, 40146371 - 40146531
Alignment:
| Q |
172 |
atacaatcaaggcaccaaaatcaagtgaccaaacaatccatttgactccatgggatctccgctttctacttgtttcaaccaacaaaaagggccttcttta |
271 |
Q |
| |
|
||||||||||| ||||||| |||||||| |||| ||| |||| ||||||||||||||||| | ||||| || || ||| ||||||||| |||||||| |
|
|
| T |
40146371 |
atacaatcaagtcaccaaattcaagtgatcaaaaaattgatttaactccatgggatctccggtacctactaattgcacccaccaaaaagggtcttcttta |
40146470 |
T |
|
| Q |
272 |
tcgccatccggttgtagcaacccaaatccaacggctgagacactctctatcctctgccctt |
332 |
Q |
| |
|
|| |||||| | || ||| |||||| |||| |||| |||||||||||| ||| ||||| |
|
|
| T |
40146471 |
tcaccatcctctagtgccaaaccaaattcaacatctgaaacactctctatcttctaccctt |
40146531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University