View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_high_10 (Length: 380)
Name: NF9920_high_10
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_high_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 2700609 - 2700980
Alignment:
| Q |
13 |
cataggacaagaagatagcccatagaagagtatagcaccacacatta----tatatcttttactaattaaggaccaacataattagcatcacaaaactat |
108 |
Q |
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| T |
2700609 |
cataggacaacaagatagcacatacaagagtatagcaccacacattaattatatatcttttactaattaaggaccaacataattagcatcacaaaactat |
2700708 |
T |
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| Q |
109 |
ggttttaggttaaacaaatctaataattgccaattaattataacaacaacaataacaacnnnnnnntctaatttaaattttattgaaaaacatctatgtt |
208 |
Q |
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| T |
2700709 |
ggttttaggctaaacaaatctaataattgccaattaaatataacaacaacaataacaacaaaaaaatctaatttaaattttattgaaaaacatctatgtt |
2700808 |
T |
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| Q |
209 |
ttgtaaaacatactcacaaaacaactaaagttaataaggttacctgacaaagcattgagaccattgaaacaagttttaaggaatgatgtggtgacattgt |
308 |
Q |
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| T |
2700809 |
ttgtaaaacatactcacaaaacaactaaagttaataaggttacctgataaagcattgagaccattgaaacaagttttaaggaatgatgtggtgacattgt |
2700908 |
T |
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| Q |
309 |
tactgggactgttaccagaaatttggcttccttcatgttctgctattaagggaatattcagagcaacatctt |
380 |
Q |
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| T |
2700909 |
tactgggattgttgccagaaatttggcttccttcatgctctgctattaagggaatattcagagcaacatctt |
2700980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 224 - 350
Target Start/End: Original strand, 10843382 - 10843511
Alignment:
| Q |
224 |
acaaaacaactaaagttaataaggttacctgacaaagcattgagaccattgaaacaagttttaaggaatgatgtggt---gacattgttactgggactgt |
320 |
Q |
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| T |
10843382 |
acaaaacaactagggttaataaggttacctgttaaagcattgagaccattgaaacaagttttaaggaaagaagtggtaagaatattgtcgttgggaccgc |
10843481 |
T |
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| Q |
321 |
taccagaaatttggcttccttcatgttctg |
350 |
Q |
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| T |
10843482 |
taccagaaatttggtttccttcatgttctg |
10843511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 10843231 - 10843325
Alignment:
| Q |
54 |
acattatatatcttttactaattaa-ggaccaacataattagcatcacaaaactatggttttaggttaaacaaatctaataattgccaattaatt |
147 |
Q |
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| T |
10843231 |
acattatatatcttttattaatttgtggaccaacataattatcatcacaaatctctggttttaggctaatctaatccattaactgtcaattaatt |
10843325 |
T |
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