View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_high_20 (Length: 289)
Name: NF9920_high_20
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 39825191 - 39825021
Alignment:
| Q |
25 |
aattatctatggtccgctacctcaatataaaggactttgacgtctctgcaaagtaatctcacccgcaattttcactgcatcggtctcatttcgttgtaat |
124 |
Q |
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| T |
39825191 |
aattatctatggtccgctaccgcaatataaaggattttgacgtctctgcaaagtaatctcacccgcaattttcactgcatcggtctcatttcgttgtaat |
39825092 |
T |
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| Q |
125 |
ataaaggttcactccgtcgacctcaaggttatagcataactgcaaccacaatttaaaaccagggtatcaac |
195 |
Q |
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| T |
39825091 |
ataaaggttcactccgtcggcctcaaggtcatagcatatctacaaccgcaatttaaaaccagggtatcaac |
39825021 |
T |
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Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 39824994 - 39824938
Alignment:
| Q |
224 |
ctctcattaatcaaatctcttttcaagtttccaccatctaggttgttaatttcttct |
280 |
Q |
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| T |
39824994 |
ctctcattaatcaaatctcttttcaagtttccaccatctaggttgttaatttcttct |
39824938 |
T |
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