View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_high_21 (Length: 278)
Name: NF9920_high_21
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 44152418 - 44152168
Alignment:
| Q |
12 |
agagagaagattgcatggactgggaacgaaagcgacgcaccgtaacggcacgattgagaagcaatttagagtaagcaggatcacgtgatctgaacacgat |
111 |
Q |
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| T |
44152418 |
agagagaagattgcatggactgggaacgaaagcgacgcaccgtaacggcacgattgagaagcaatttagagtaagcaggatcacgtgatctgaacacgat |
44152319 |
T |
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| Q |
112 |
ggaagcagcggcaagtgcagcggcggtttcacctgccacgtcagatcctggatgcgacccatcgatcttgtaaactgtgcgtaacgtatccatatcttcc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44152318 |
ggaagcagcggcaagtgcagcggcggtttcacctgccacgtcagatcctggatgcgacccatcgatcttgtaaactgtgcgtaacgtatccatatcttcc |
44152219 |
T |
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| Q |
212 |
ggtctctcccaacagttatggtccgataaaggatcaccgacttgaacgaac |
262 |
Q |
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| T |
44152218 |
ggtctctcccaacagttatggtccgataaaggatcaccgacttgaacgaac |
44152168 |
T |
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