View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_high_28 (Length: 236)
Name: NF9920_high_28
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 2189176 - 2188990
Alignment:
| Q |
17 |
cagtctgagcatcctaataagtgttttgcaaatcatcaaactatcatctacaaagaagagacgagtaattcttgtggggctcctacagcaatttgaatac |
116 |
Q |
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| T |
2189176 |
cagtctgagcatcctaataagtgttttgcaaatcattaaactatcatctacaaagaagagacgagtaattcttgtggggctcctacaacaatttgaatac |
2189077 |
T |
|
| Q |
117 |
catggaggttacaattttcttgagatttccatatttatcctgaaattacttctgtatatatgataaacatgtaaggagatagcgagt |
203 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2189076 |
catggaggttacaactttcttgagatttccatatttatcctaaaattacttctgtatatatgataaacatgtaatgagatagcgagt |
2188990 |
T |
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