View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_high_29 (Length: 236)
Name: NF9920_high_29
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17920605 - 17920826
Alignment:
| Q |
1 |
tttgctaaggtaatccatccaaccatttggagtatcaatatcctcattattcttctcataatcaatagtccatctaacagcagaacttccatctgccttg |
100 |
Q |
| |
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|||||||||||| |||||||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17920605 |
tttgctaaggtagtccatccagccatttggagtctcaacttcctcattgttcttctcataatcaatagtccatctaacagcagaacttccatctgccttg |
17920704 |
T |
|
| Q |
101 |
ttaagcacttctaagatgagcttaaagaccttatagttttcaatatctccaccaaacagcttgaaagtgannnnnnngttctgctcatcaacttcttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17920705 |
ttaagcacttctaagatgagcttaaagaccttgtagttttcaatatctccaccaaacagcttgaaagtgatttttttgttctgctcatcaacttcttcaa |
17920804 |
T |
|
| Q |
201 |
cctgctcattgcatgtgtgtac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
17920805 |
cctgctcattgcatgtgtgtac |
17920826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17868872 - 17869093
Alignment:
| Q |
1 |
tttgctaaggtaatccatccaaccatttggagtatcaatatcctcattattcttctcataatcaatagtccatctaacagcagaacttccatctgccttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
17868872 |
tttgctaaggtaatccatccaaccatttggagtatcaatatcctcattattcttctcataatcaatactccatctaacagcagaacttccatcagccttg |
17868971 |
T |
|
| Q |
101 |
ttaagcacttctaagatgagcttaaagaccttatagttttcaatatctccaccaaacagcttgaaagtgannnnnnngttctgctcatcaacttcttcaa |
200 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| |
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| T |
17868972 |
ttaagcacttctaagatgagcttaaataccttatagttttcaatatctccaccaaacagcttgtaagtgatttttttgttctgatcatcaacttcttcaa |
17869071 |
T |
|
| Q |
201 |
cctgctcattgcatgtgtgtac |
222 |
Q |
| |
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| |||||||||||||||||| |
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| T |
17869072 |
cactctcattgcatgtgtgtac |
17869093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17851849 - 17852070
Alignment:
| Q |
1 |
tttgctaaggtaatccatccaaccatttggagtatcaatatcctcattattcttctcataatcaatagtccatctaacagcagaacttccatctgccttg |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| ||||||| |||||| ||||| |
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| T |
17851849 |
tttgctaaggtagtccatccaaccatttggagtatcaacattctcattgttcttctcataatcaatagtccatctaagagcagaagttccattatccttg |
17851948 |
T |
|
| Q |
101 |
ttaagcacttctaagatgagcttaaagaccttatagttttcaatatctccaccaaacagcttgaaagtgannnnnnngttctgctcatcaacttcttcaa |
200 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
17851949 |
ataatcacttctaagatgagcttaaagaccttatagttttcaatatctccaccaaaaagcttgaaagtgatttttttgttctgctcatcaacttcttcaa |
17852048 |
T |
|
| Q |
201 |
cctgctcattgcatgtgtgtac |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
17852049 |
cctgctcattgcatgtgtgtac |
17852070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17817470 - 17817691
Alignment:
| Q |
1 |
tttgctaaggtaatccatccaaccatttggagtatcaatatcctcattattcttctcataatcaatagtccatctaacagcagaacttccatctgccttg |
100 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17817470 |
tttgctaaggtagtccatccagccattgggagtatcaatatcctcatttttcttctcataatcaatagtccatctaacagcagaacttccattatccttg |
17817569 |
T |
|
| Q |
101 |
ttaagcacttctaagatgagcttaaagaccttatagttttcaatatctccaccaaacagcttgaaagtgannnnnnngttctgctcatcaacttcttcaa |
200 |
Q |
| |
|
||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
17817570 |
ataatcacttctaagataacgttaaagaccttatagttttcaatatctccaccaaacagcttgaaagtgatttttttgttctcctcatcaacttcttcaa |
17817669 |
T |
|
| Q |
201 |
cctgctcattgcatgtgtgtac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
17817670 |
cctgctcattgcatgtgtgtac |
17817691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17843334 - 17843555
Alignment:
| Q |
1 |
tttgctaaggtaatccatccaaccatttggagtatcaatatcctcattattcttctcataatcaatagtccatctaacagcagaacttccatctgccttg |
100 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
17843334 |
tttgctaaggtagtccatccagccattgggagtatcaatatcctcatttttcttctcataaccaatagtccatctaacagcagaacttccattatccttg |
17843433 |
T |
|
| Q |
101 |
ttaagcacttctaagatgagcttaaagaccttatagttttcaatatctccaccaaacagcttgaaagtgannnnnnngttctgctcatcaacttcttcaa |
200 |
Q |
| |
|
||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
17843434 |
ataatcacttctaagataacgttaaagaccttatagttttcaatatctccaccaaacagcttgaaagtgatttttttgttctcctcatcaacttcttcaa |
17843533 |
T |
|
| Q |
201 |
cctgctcattgcatgtgtgtac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
17843534 |
cctgctcattgcatgtgtgtac |
17843555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 17822178 - 17822328
Alignment:
| Q |
23 |
ccatttggagtatcaatatcctcattattcttctcataatcaatagtccatctaacagcagaacttccatctgccttgttaagcacttctaagatgagct |
122 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||| |||||||||||| ||||||||| | ||||| | || || | || ||||| | |||||||| |
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| T |
17822178 |
ccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagcagcatttccaccagctttatcaattacttcaaggatgagct |
17822277 |
T |
|
| Q |
123 |
taaagaccttatagttt---tcaatatctccaccaaacagcttgaaagtga |
170 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| ||||||||||||| |
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|
| T |
17822278 |
taaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga |
17822328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 17691631 - 17691765
Alignment:
| Q |
1 |
tttgctaaggtaatccatccaaccatttggagtatcaatatcctcattattcttctcataatcaatagtccatctaacagcagaacttccatctgccttg |
100 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||| |||| ||||||| |||||| || | | ||||| ||||| |
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| T |
17691631 |
tttgctaaggtattccatccaactatttggaggttcaatatcctcattgatcttctcatattcaacagtccatttaacagaagtagtgccatcagcctta |
17691730 |
T |
|
| Q |
101 |
ttaagcacttctaagatgagcttaaagaccttata |
135 |
Q |
| |
|
| || ||||| | ||||||||||||||||||||| |
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|
| T |
17691731 |
tcaattacttcaatgatgagcttaaagaccttata |
17691765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 17800856 - 17801018
Alignment:
| Q |
10 |
gtaatccatccaaccatttggagtatcaatatcctcattattcttctcataatcaatagtccatctaacagcagaacttccatctgccttgttaagcact |
109 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| || ||||| |||| |||| ||||||| |||| |||||| | ||||| |||| | || ||| |
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| T |
17800856 |
gtaatccatccagccatttggagggtcaatatcctcgttgatcttcacatattcaacagtccatttaactgcagaagtcccatcacccttatcaattact |
17800955 |
T |
|
| Q |
110 |
tctaagatgagcttaaagaccttatag---ttttcaatatctccaccaaacagcttgaaagtg |
169 |
Q |
| |
|
|| | ||||||||||||| |||||||| | ||||||||||||||||| |||||| ||||| |
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|
| T |
17800956 |
tcaatgatgagcttaaagtccttatagtgctcatcaatatctccaccaaagagcttgtaagtg |
17801018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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