View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_high_6 (Length: 408)
Name: NF9920_high_6
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_high_6 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 8894482 - 8894858
Alignment:
| Q |
19 |
gtatcgcagttgggttcttcaattggtgggaaattttcttattgtttagcgtcattgttttcagaggctaatatttcaagcaaactatattttggagata |
118 |
Q |
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| T |
8894482 |
gtatctcagttgggttcttcaattggtgggaaattttcttattgtttagcgtcattgttttcaaaggctaatatttcaagcaaactatattttggagata |
8894581 |
T |
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| Q |
119 |
tggcagtggtttctggtcacggggttgtatcaactcctttaatacaatctttttatgttgggagttacttcacaaatttggaagcatttagtgttggaga |
218 |
Q |
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| T |
8894582 |
tggcagtggtttctggtcacggggttgtatcaactcctttaatacaatctttttatgttgggaattacttcacaaatttggaagcatttagtgttggaga |
8894681 |
T |
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| Q |
219 |
ccacattataaaattgaagcattcatcgttaataccggataatgagggaaatgtcgtaattgattcaggatcaacaataacccagttgccaaatgatgtt |
318 |
Q |
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| T |
8894682 |
ccacattataaaattgaaggattcatcattaataccggataatgagggcaatgccgtaattgattcaggatcaacgataacccagttgccaaatgatgtt |
8894781 |
T |
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| Q |
319 |
tattctcaattagaaactgcagtaatatctatggttaagttaaagcgtgttaaagaccctactcaacaattgagtct |
395 |
Q |
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| T |
8894782 |
tattctcagttagaaactgcagtaatatctatggttaagttaaagcgtgttaaagaccctactcaacaattgagtct |
8894858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 400
Target Start/End: Complemental strand, 15060 - 14842
Alignment:
| Q |
182 |
gttacttcacaaatttggaagcatttagtgttggagaccacattataaaattgaagcattcatcgttaataccggataatgagggaaatgtcgtaattga |
281 |
Q |
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| T |
15060 |
gttacttcacaaatttagaagcatttagcgtgggagaccacattatcaaattcaatgactcctccttaatacctgataaggaaggaaatacaataattga |
14961 |
T |
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| Q |
282 |
ttcaggatcaacaataacccagttgccaaatgatgtttattctcaattagaaactgcagtaatatctatggttaagttaaagcgtgttaaagaccctact |
381 |
Q |
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| T |
14960 |
ttctggatcaacattaactattttgccagaagatgtttattctcagttagaatctacagtggcatctatgattaagttaaagcgtgttaaggatcctaat |
14861 |
T |
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| Q |
382 |
caacaattgagtctctgct |
400 |
Q |
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| T |
14860 |
caacaattgagtctttgct |
14842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 15201 - 15097
Alignment:
| Q |
32 |
gttcttcaattggtgggaaattttcttattgtttagcgtcattgttttcagaggctaatatttcaagcaaactatattttggagatatggcagtggtttc |
131 |
Q |
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||||||| ||| ||| ||||||||||||||| | | | |||| |||||| | ||||| | |||||||| |||| |||||||||| | |||||| ||||| |
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| T |
15201 |
gttcttcgattaatggaaaattttcttattgtctcgtgccattattttcaaatgctaacagttcaagcagactaaattttggagacacggcagtagtttc |
15102 |
T |
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| Q |
132 |
tggtc |
136 |
Q |
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|||| |
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| T |
15101 |
cggtc |
15097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 19573878 - 19573914
Alignment:
| Q |
195 |
tttggaagcatttagtgttggagaccacattataaaa |
231 |
Q |
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| T |
19573878 |
tttggaagcatttagtgtgggagatcacattataaaa |
19573914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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