View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_high_7 (Length: 407)
Name: NF9920_high_7
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 392
Target Start/End: Complemental strand, 35440044 - 35439661
Alignment:
| Q |
9 |
agcagagattggaaattgtgaagttttttaaatgttcttccttagatctcactcatatgagagtatctaagcaaacttataatcatggaacagcttaaga |
108 |
Q |
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| T |
35440044 |
agcagaaattggaaattgtgaagtttgttaaatgttcttccttagatctcactcatatgagagtatctaagcaaacttataatcatggaacagcttaaga |
35439945 |
T |
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| Q |
109 |
acattggcgatgtaagactcaaatgtaacttcaatactgtggacctaggttttcacattgcttgcaaatctaggtctgatatctaggattgttcatagtt |
208 |
Q |
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| T |
35439944 |
acattggcgatgtaagactcaaatgtaacttcaatactgtggacctaggttttcacattgcttgcaaatctaggtctgatatctaggattgttcatagtt |
35439845 |
T |
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| Q |
209 |
cgattcaagaaggaaaatcgaactgaacatgtgcaaagatttaattagtgcaccgattctgtgttttcaaaccaaactagttacagaaaactgaattgaa |
308 |
Q |
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| T |
35439844 |
caattcaagaaggaaaatcgaactgaacatgtgcaaagatttaattagtgcaccgattctgtgttttcaaaccaaactagttacagaaaactgaattgaa |
35439745 |
T |
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| Q |
309 |
ccttttagaattgaacaccaaaatgctatcatacattgatattagcactgtcaaaagaaacaaaaactgaaccaatccaaaaag |
392 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
35439744 |
ccttttagaattcaacaccaaaatgctattatacattgatattagcactgtcaaaagagacaaaaactgaaccactccaaaaag |
35439661 |
T |
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