View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_low_1 (Length: 619)
Name: NF9920_low_1
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 38748755 - 38749061
Alignment:
| Q |
18 |
gaggagagagtgtgagttgagaaagagaaaataaaatggtgacaaggatgggaataagggatggtaagggg-ggtatgtggctaggtagcatttgagagt |
116 |
Q |
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| T |
38748755 |
gaggagagagtgtgagttgagaaagagaaaataaaatggtgacaaggatgggaataagggatggtaagggggggtatgtggctaggtagcatttgagagt |
38748854 |
T |
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| Q |
117 |
aacatgcaaaagagggtatgtggcagtttgttaattcattggggcctaatgttttggctatgtgtaattcgattacaagctctcaattcaacaatatccg |
216 |
Q |
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| T |
38748855 |
aacatgcaaaagagggtatgtggcagtttgttaattcattgggacctaatgttttggctatgtgtaattcgattacaagctctcaattcaacaatatccg |
38748954 |
T |
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| Q |
217 |
tgcctttttggttttgggtgacatgaaaattctagatcacgatatatagaattttatgtatagaatacacaaagaggtgtccatgcaatgtactttgata |
316 |
Q |
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| T |
38748955 |
tgcccttttggttttgggtgacatgaaaattctagatcacgatatatagaattttatgtatagaatacacaaagaggtgtccatgaaatgtactttgata |
38749054 |
T |
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| Q |
317 |
cattgca |
323 |
Q |
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| T |
38749055 |
cattgca |
38749061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 352 - 533
Target Start/End: Original strand, 38749090 - 38749278
Alignment:
| Q |
352 |
atccgtttctcttccttgacttagtatagtt--ttaccctacaaattctcattcataactccataatttgctggataagcatgcgataaaattgttgggg |
449 |
Q |
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| T |
38749090 |
atccgtttctcttccttgacttagtatagttagttaccctacaaattctcattcataactccataatttgctggataagcatgcgataaaattgttgggg |
38749189 |
T |
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| Q |
450 |
catgactcatgatcaggtctaagatatgg----tatattgag-taaaaacaattacataaatgagttgcaaatcaaatcttatcttaac |
533 |
Q |
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| T |
38749190 |
catgactcatgatcaggtctaagatatggcatatatattgagctaaaaacaattgcataaataagttgcaaatcaaatcttatcttaac |
38749278 |
T |
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