View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_low_12 (Length: 377)
Name: NF9920_low_12
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 12220073 - 12219722
Alignment:
| Q |
11 |
caaaggaaatgaagatagaagaacacctgaatggaagtggtaaattagggaacaagtgaggcttccttaagtgggaaggaaatgttaaaatgtagaataa |
110 |
Q |
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| T |
12220073 |
caaaggaaatgaagatagaagaaaacctgaatggcagtggtaaattagggaataagtgaggcttccttaagtgggaaggaagtgtgaaaatgtagaacaa |
12219974 |
T |
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| Q |
111 |
atctacccaatctaatggctcatcttcatacacatcaaccattttaccaaacccttccatatctcctggtttttgccaaagcttacttttctcttccatt |
210 |
Q |
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| T |
12219973 |
atctacccaatctaatggttcatcttcatacacatcaaccattttaccaaacccttccatatctcctggtttttgccaaagcttactcttctcttccatt |
12219874 |
T |
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| Q |
211 |
gaaagattgaaaagttctcgagcacctatcttcacatcttccagcatttccatgctatgtccgtgattaattagctgttacacataaccacaatttttat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12219873 |
gaaagattgaaaagttctcgagcacctatcttcacatcttccagcatttccatgctatgtccgtgattaattagctgttacacataaccacaatttttat |
12219774 |
T |
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| Q |
311 |
agagttacattactctatgtttggtgcagtaaatataatacacaattttatt |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12219773 |
agagttacattactctatgtttggtgcagtaaatataatacacaattatatt |
12219722 |
T |
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