View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9920_low_13 (Length: 371)

Name: NF9920_low_13
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9920_low_13
NF9920_low_13
[»] chr5 (3 HSPs)
chr5 (1-289)||(28312705-28312992)
chr5 (187-231)||(32379626-32379670)
chr5 (328-357)||(28312634-28312663)
[»] chr3 (2 HSPs)
chr3 (1-161)||(39621467-39621627)
chr3 (183-231)||(39621399-39621447)
[»] chr6 (1 HSPs)
chr6 (78-159)||(17912566-17912647)
[»] chr7 (2 HSPs)
chr7 (83-159)||(17175181-17175257)
chr7 (104-159)||(21526263-21526318)
[»] chr4 (1 HSPs)
chr4 (88-160)||(9475876-9475948)
[»] chr1 (3 HSPs)
chr1 (15-160)||(44316786-44316928)
chr1 (183-230)||(41945890-41945937)
chr1 (185-231)||(42677677-42677723)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 28312992 - 28312705
Alignment:
Q  1 ggcttatgggtttgtaggtcgcgtatcagaggaagaggaaagaagtgagtatgaaagaagttttgttttgtgtaagtgtaaaagaggaaggggaaaagtc 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28312992 ggcttatgggtttgtaggtcgcgtaacagaggaagaggaaagaagtgagtatgaaagaagttttgttttgtgtaagtgtaaaagaggaaggggaaaagtc 28312893  T
Q  101 tgagtgggccacttgagaaaaataaaatacgctgagcctatttttgtaattttcctataagnnnnnnnnnnnnnnnnnnnnnttgggggtgggttgtggc 200  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |                     || |||||||||||||||    
T  28312892 tgagtggaccacttgagaaaaataaaatatgctgagcctatttttgtaattttcctataggaaaaaaaataaaaaataaaaatt-ggggtgggttgtggc 28312794  T
Q  201 ccacctcaacccatataaacctccgccactgtgcatctcagataattttaataagactcgtctaaatttcaacaagtagatgaaagtgt 289  Q
    |||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  28312793 ccacctcaacccatataagcctccgccactgttcatctcacataattttaataggactcgtctaaatttcaacaagtagatgaaagtgt 28312705  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 32379626 - 32379670
Alignment:
Q  187 gggtgggttgtggcccacctcaacccatataaacctccgccactg 231  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||    
T  32379626 gggtgggtcgtggcccacctcagcccatataagcctccgccactg 32379670  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 357
Target Start/End: Complemental strand, 28312663 - 28312634
Alignment:
Q  328 atgtataacgagggttgggtatataaaact 357  Q
    ||||||||||||||||||||||||||||||    
T  28312663 atgtataacgagggttgggtatataaaact 28312634  T

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Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 39621627 - 39621467
Alignment:
Q  1 ggcttatgggtttgtaggtcgcgtatcagaggaagaggaaagaagtgagtatgaaagaagttttgttttgtgtaagtgtaaaagaggaaggggaaaagtc 100  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||    
T  39621627 ggcttatgggtttgtaggtcgtgtaacagaggaagaggaaagaagtgagtatgaaagaagttttgttttgtgtacgtgtaacaaaggaaggggaaaagtc 39621528  T
Q  101 tgagtgggccacttgagaaaaataaaatacgctgagcctatttttgtaattttcctataag 161  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||    
T  39621527 tgagtgggccacttgaaaaaaataaaatatgctgagcctatttttgtaatttccctataag 39621467  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 39621447 - 39621399
Alignment:
Q  183 ttgggggtgggttgtggcccacctcaacccatataaacctccgccactg 231  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||    
T  39621447 ttgggggtgggttgtggcccacctcaacccatataagcctcagccactg 39621399  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 17912566 - 17912647
Alignment:
Q  78 gtaaaagaggaaggggaaaagtctgagtgggccacttgagaaaaataaaatacgctgagcctatttttgtaattttcctata 159  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||||||||| | ||||  |||||||||| ||| ||||||    
T  17912566 gtaacagaggaaggggaaaagtctgggtgggccacttgggaaaaataaaatatgatgagggtatttttgtattttccctata 17912647  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 17175181 - 17175257
Alignment:
Q  83 agaggaaggggaaaagtctgagtgggccacttgagaaaaataaaatacgctgagcctatttttgtaattttcctata 159  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||||| | ||||  |||||||||| ||| ||||||    
T  17175181 agaggaaggggaaaagtctgggtggaccacttgggaaaaataaaatatgatgagggtatttttgtattttccctata 17175257  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 21526263 - 21526318
Alignment:
Q  104 gtgggccacttgagaaaaataaaatacgctgagcctatttttgtaattttcctata 159  Q
    ||||||||||||  |||||||| |||| |||||  |||||||||||||||||||||    
T  21526263 gtgggccacttggaaaaaataatatactctgaggatatttttgtaattttcctata 21526318  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 9475876 - 9475948
Alignment:
Q  88 aaggggaaaagtctgagtgggccacttgagaaaaataaaatacgctgagcctatttttgtaattttcctataa 160  Q
    |||||||| |||||| |||||||| |||| |||||||||||| ||||||  |||||||||||||| |||||||    
T  9475876 aaggggaatagtctgggtgggccaattgaaaaaaataaaataagctgagggtatttttgtaatttccctataa 9475948  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 44316786 - 44316928
Alignment:
Q  15 taggtcgcgtatcagaggaagaggaaagaagtgagtatgaaagaagttttgttttgtgtaagtgtaaaa--gaggaaggggaaaagtctgagtgggccac 112  Q
    ||||||||||| ||||||||| | || |||||||||||||| ||||||||||     ||| |||||| |  |||||||||||||||||||  | | |||     
T  44316786 taggtcgcgtagcagaggaagggcaatgaagtgagtatgaatgaagttttgt-----gtacgtgtaatatagaggaaggggaaaagtctggatagaccaa 44316880  T
Q  113 ttgagaaaaataaaatacgctgagcctatttttgtaattttcctataa 160  Q
    | || |||||||||||| | ||||  |||||| ||| ||| |||||||    
T  44316881 tcgaaaaaaataaaataagttgagtgtattttcgtattttccctataa 44316928  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 41945937 - 41945890
Alignment:
Q  183 ttgggggtgggttgtggcccacctcaacccatataaacctccgccact 230  Q
    |||||||||||  ||||||||||||| ||||||||| |||||||||||    
T  41945937 ttgggggtgggccgtggcccacctcagcccatataagcctccgccact 41945890  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 42677723 - 42677677
Alignment:
Q  185 gggggtgggttgtggcccacctcaacccatataaacctccgccactg 231  Q
    |||||||||  ||||||||||||| ||||||||| ||||||||||||    
T  42677723 gggggtgggccgtggcccacctcagcccatataagcctccgccactg 42677677  T

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