View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9920_low_14 (Length: 356)

Name: NF9920_low_14
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9920_low_14
NF9920_low_14
[»] chr6 (1 HSPs)
chr6 (84-154)||(19112158-19112228)
[»] chr2 (1 HSPs)
chr2 (84-154)||(33347576-33347646)
[»] chr1 (1 HSPs)
chr1 (15-90)||(20222189-20222262)
[»] chr8 (1 HSPs)
chr8 (87-154)||(26383739-26383806)
[»] scaffold0354 (1 HSPs)
scaffold0354 (95-154)||(84-143)


Alignment Details
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 19112158 - 19112228
Alignment:
Q  84 cagattgactatcagaaatgcacttatttaaaacaactttgagtcgatttactaacactttcgctaccacc 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19112158 cagattgactatcagaaatgcacttatttaaaacaactttgagtcgatttgctaacactttcgctaccacc 19112228  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 33347646 - 33347576
Alignment:
Q  84 cagattgactatcagaaatgcacttatttaaaacaactttgagtcgatttactaacactttcgctaccacc 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33347646 cagattgactatcagaaatgcacttatttaaaacaactttgagtcgatttgctaacactttcgctaccacc 33347576  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 20222262 - 20222189
Alignment:
Q  15 agaaggtacacttgatcaagagcaggattgacagatttcttatttcggagtcttggattagagagtgaccagattg 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  20222262 agaaggtacacttgatcaagagcaggattgacagatttcttatttcggagtcttggatt--agagtgaccagattg 20222189  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 26383739 - 26383806
Alignment:
Q  87 attgactatcagaaatgcacttatttaaaacaactttgagtcgatttactaacactttcgctaccacc 154  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26383739 attgactattagaaatgcacttatttaaaacaactttgagttgatttgctaacactttcgctaccacc 26383806  T

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Target: scaffold0354 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 84 - 143
Alignment:
Q  95 tcagaaatgcacttatttaaaacaactttgagtcgatttactaacactttcgctaccacc 154  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  84 tcagaaatgcacttatttaaaacaaatttgagtcgatttgctaacactttcgctaccacc 143  T

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