View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9920_low_16 (Length: 350)

Name: NF9920_low_16
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9920_low_16
NF9920_low_16
[»] chr5 (14 HSPs)
chr5 (124-292)||(28899675-28899843)
chr5 (124-292)||(28936070-28936238)
chr5 (206-284)||(27290699-27290777)
chr5 (212-284)||(22444172-22444244)
chr5 (183-286)||(19865149-19865251)
chr5 (183-286)||(21499870-21499972)
chr5 (124-163)||(23724083-23724122)
chr5 (124-163)||(30928698-30928737)
chr5 (124-163)||(30955582-30955621)
chr5 (18-55)||(28899569-28899606)
chr5 (18-55)||(28935964-28936001)
chr5 (215-284)||(22897385-22897454)
chr5 (218-247)||(572394-572423)
chr5 (218-247)||(35873031-35873060)
[»] chr6 (17 HSPs)
chr6 (124-294)||(28198468-28198638)
chr6 (206-284)||(30722266-30722344)
chr6 (200-283)||(16768718-16768798)
chr6 (183-286)||(922939-923041)
chr6 (183-286)||(8764067-8764170)
chr6 (200-283)||(22481718-22481801)
chr6 (124-163)||(22925247-22925286)
chr6 (124-163)||(22940961-22941000)
chr6 (124-163)||(23863405-23863444)
chr6 (218-288)||(17030034-17030104)
chr6 (124-286)||(12965129-12965292)
chr6 (258-288)||(12615984-12616014)
chr6 (218-247)||(18816540-18816569)
chr6 (220-288)||(26912569-26912635)
chr6 (220-288)||(26929856-26929922)
chr6 (183-238)||(20154826-20154882)
chr6 (183-238)||(22177950-22178006)
[»] chr3 (9 HSPs)
chr3 (124-294)||(28167358-28167528)
chr3 (206-284)||(19703354-19703432)
chr3 (183-286)||(29941276-29941378)
chr3 (183-286)||(29990430-29990532)
chr3 (16-55)||(28167249-28167288)
chr3 (215-288)||(1987108-1987181)
chr3 (183-247)||(15370238-15370302)
chr3 (218-283)||(19446077-19446142)
chr3 (218-283)||(19447902-19447967)
[»] chr1 (11 HSPs)
chr1 (124-292)||(16654122-16654290)
chr1 (206-284)||(21084658-21084736)
chr1 (183-286)||(16229329-16229431)
chr1 (183-286)||(20469747-20469848)
chr1 (183-286)||(20540483-20540584)
chr1 (16-55)||(31448805-31448844)
chr1 (183-247)||(15817639-15817704)
chr1 (18-55)||(16654015-16654052)
chr1 (124-223)||(9187325-9187425)
chr1 (218-247)||(13482677-13482706)
chr1 (218-247)||(21646736-21646765)
[»] chr2 (8 HSPs)
chr2 (124-294)||(10116825-10116995)
chr2 (124-283)||(21694369-21694527)
chr2 (124-283)||(21709098-21709257)
chr2 (183-294)||(19447592-19447703)
chr2 (183-294)||(19462402-19462513)
chr2 (229-288)||(27686492-27686549)
chr2 (183-286)||(32680347-32680449)
chr2 (16-55)||(10116716-10116755)
[»] chr7 (8 HSPs)
chr7 (124-283)||(16035416-16035575)
chr7 (124-263)||(16050156-16050295)
chr7 (183-294)||(10850512-10850623)
chr7 (183-294)||(13896527-13896638)
chr7 (150-283)||(30242968-30243100)
chr7 (200-283)||(4946809-4946891)
chr7 (124-173)||(15005977-15006026)
chr7 (218-247)||(23006076-23006105)
[»] scaffold0347 (1 HSPs)
scaffold0347 (124-283)||(17743-17902)
[»] chr4 (9 HSPs)
chr4 (183-284)||(26140414-26140514)
chr4 (183-286)||(16279797-16279899)
chr4 (183-286)||(18466508-18466610)
chr4 (16-55)||(15218351-15218390)
chr4 (183-280)||(20762036-20762132)
chr4 (16-55)||(15237101-15237140)
chr4 (218-288)||(22729014-22729084)
chr4 (124-173)||(15270367-15270416)
chr4 (124-173)||(15300709-15300758)
[»] chr8 (11 HSPs)
chr8 (212-284)||(21338763-21338835)
chr8 (212-284)||(21378724-21378796)
chr8 (150-286)||(25745577-25745711)
chr8 (212-284)||(33240814-33240886)
chr8 (212-284)||(33270158-33270230)
chr8 (124-163)||(17896387-17896426)
chr8 (229-288)||(19908079-19908136)
chr8 (183-227)||(15016784-15016828)
chr8 (124-286)||(28505138-28505301)
chr8 (124-173)||(11343801-11343850)
chr8 (218-247)||(12481592-12481621)
[»] scaffold0170 (1 HSPs)
scaffold0170 (124-288)||(356-520)
[»] scaffold0954 (1 HSPs)
scaffold0954 (200-288)||(1429-1516)
[»] scaffold0322 (1 HSPs)
scaffold0322 (218-288)||(16608-16678)
[»] scaffold0021 (2 HSPs)
scaffold0021 (215-284)||(97657-97726)
scaffold0021 (215-284)||(178570-178639)
[»] scaffold1658 (1 HSPs)
scaffold1658 (150-228)||(952-1028)
[»] scaffold1376 (1 HSPs)
scaffold1376 (218-247)||(712-741)
[»] scaffold0211 (1 HSPs)
scaffold0211 (183-212)||(4846-4875)
[»] scaffold0049 (2 HSPs)
scaffold0049 (16-53)||(36732-36769)
scaffold0049 (124-156)||(36625-36657)
[»] scaffold0022 (1 HSPs)
scaffold0022 (229-288)||(155481-155538)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 8e-86; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 124 - 292
Target Start/End: Original strand, 28899675 - 28899843
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 223  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28899675 gatctacattgattcgttcttgttattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 28899774  T
Q  224 gaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtgttctggct 292  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28899775 gaaaacttcgatttgattctgtttcgttgatttcgttcttgaatccgaaaataaatcggtgttctggct 28899843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 124 - 292
Target Start/End: Original strand, 28936070 - 28936238
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 223  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28936070 gatctacattgattcgttcttgttattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 28936169  T
Q  224 gaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtgttctggct 292  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28936170 gaaaacttcgatttgattctgtttcgttgatttcgttcttgaatccgaaaataaatcggtgttctggct 28936238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 27290699 - 27290777
Alignment:
Q  206 ttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtg 284  Q
    |||||| ||||||||| ||||||||| | |||||||||||||||||||  | |||||||||||||||||||||||||||    
T  27290699 ttcgaatgaaaatctttggaaaactttggtttgattctgtttcgttgatgttgttcttgaatccgaaaataaatcggtg 27290777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 22444244 - 22444172
Alignment:
Q  212 cgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtg 284  Q
    |||||||||||||||||| | | ||||||||||||||||||   | |||||||||||||||||||||||||||    
T  22444244 cgaaaatcttcggaaaaccttggtttgattctgtttcgttgctgttgttcttgaatccgaaaataaatcggtg 22444172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 19865149 - 19865251
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||||||||||||||||||||| | | | ||  |||| ||||||||||||||||||| ||||| ||    |||||| |||||||||||||||    
T  19865149 ttacctgtgatttaatcggagatttcgaacaagattttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatcgg 19865247  T
Q  283 tgtt 286  Q
    ||||    
T  19865248 tgtt 19865251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 21499972 - 21499870
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||||||||||||||||||||| | | | ||  |||| ||||||||||||||||||| ||||| ||    |||||| |||||||||||||||    
T  21499972 ttacctgtgatttaatcggagatttcgaacaagattttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatcgg 21499874  T
Q  283 tgtt 286  Q
    ||||    
T  21499873 tgtt 21499870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 23724083 - 23724122
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaag 163  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23724083 gatctacattgattcgttcttattattgttcttgagaaag 23724122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 30928737 - 30928698
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaag 163  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30928737 gatctacattgattcgttcttattattgttcttgagaaag 30928698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 30955621 - 30955582
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaag 163  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30955621 gatctacattgattcgttcttattattgttcttgagaaag 30955582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 28899569 - 28899606
Alignment:
Q  18 tttcacaaataaagcttgaatcaacatagatctaaaga 55  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  28899569 tttcacaaataaagcttgaatcaacgtagatctaaaga 28899606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 28935964 - 28936001
Alignment:
Q  18 tttcacaaataaagcttgaatcaacatagatctaaaga 55  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  28935964 tttcacaaataaagcttgaatcaacgtagatctaaaga 28936001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 22897454 - 22897385
Alignment:
Q  215 aaatcttcggaaaacttcgatttgattctgtttcgttga-cttcgttcttgaatccgaaaataaatcggtg 284  Q
    ||||||||||||| ||||||||||||||||||| |||||  |||   |||||| |||||||||||||||||    
T  22897454 aaatcttcggaaatcttcgatttgattctgttt-gttgattttctgacttgaaaccgaaaataaatcggtg 22897385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 572394 - 572423
Alignment:
Q  218 tcttcggaaaacttcgatttgattctgttt 247  Q
    ||||||||||||||||||||||||||||||    
T  572394 tcttcggaaaacttcgatttgattctgttt 572423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 35873031 - 35873060
Alignment:
Q  218 tcttcggaaaacttcgatttgattctgttt 247  Q
    ||||||||||||||||||||||||||||||    
T  35873031 tcttcggaaaacttcgatttgattctgttt 35873060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 124 - 294
Target Start/End: Original strand, 28198468 - 28198638
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 223  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28198468 gatctacattgattcgttcttgttattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 28198567  T
Q  224 gaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtgttctggctgg 294  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28198568 gaaaacttcgatttgattttgtttcgttgatttcgttcttgaatccgaaaataaatcggtgttctggctgg 28198638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 30722266 - 30722344
Alignment:
Q  206 ttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtg 284  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  30722266 ttcgaacggaaatcttcgaaaaactttgatttgattctgtttcgttgatgttgttcttgaatccgaaaataaatcggtg 30722344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 16768718 - 16768798
Alignment:
Q  200 ggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggt 283  Q
    |||||||||||||   |||||||||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||    
T  16768718 ggagatttcgaac---aatcttcggaaaacttcgatctgattccgttttgttgatttcgttcttgaatccgaaaataaatcggt 16768798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 923041 - 922939
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||||||||||||||||||||| | | | ||  |||| ||||||||||||||||||| ||||| ||    |||||| |||||||||||||||    
T  923041 ttacctgtgatttaatcggagatttcgaacaagattttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatcgg 922943  T
Q  283 tgtt 286  Q
    ||||    
T  922942 tgtt 922939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 8764170 - 8764067
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacga-aaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcg 281  Q
    |||||||||||||||| ||||||||||||| | |||| ||  |||| ||||||||||||||||||| ||||| ||    |||||| ||||||||||||||    
T  8764170 ttacctgtgatttaattggagatttcgaacaagaaatttttagaaatcttcgatttgattctgttt-gttgatttttaacttgaaaccgaaaataaatcg 8764072  T
Q  282 gtgtt 286  Q
    |||||    
T  8764071 gtgtt 8764067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 22481718 - 22481801
Alignment:
Q  200 ggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgact-tcgttcttgaatccgaaaataaatcggt 283  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||||| ||||| | ||   |||||||||||||||||||||||    
T  22481718 ggagattttgagagaaaatcttcggaaaacttcgatttgattctgttt-gttgattctctggcttgaatccgaaaataaatcggt 22481801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 22925247 - 22925286
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaag 163  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22925247 gatctacattgattcgttcttattattgttcttgagaaag 22925286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 22940961 - 22941000
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaag 163  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22940961 gatctacattgattcgttcttattattgttcttgagaaag 22941000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 23863405 - 23863444
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaag 163  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23863405 gatctacattgattcgttcttattattgttcttgagaaag 23863444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 17030034 - 17030104
Alignment:
Q  218 tcttcggaaaacttcgatttgattctgtttcgttga-cttcgttcttgaatccgaaaataaatcggtgttct 288  Q
    |||||||||||||||||||||||||||||| |||||  |||   |||||| |||||||||||||||||||||    
T  17030034 tcttcggaaaacttcgatttgattctgttt-gttgattttctgacttgaaaccgaaaataaatcggtgttct 17030104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 286
Target Start/End: Original strand, 12965129 - 12965292
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgattt-aatcggagatttcgaacgaaaatcttc 222  Q
    |||||||||||||||  |||| ||  |||| ||||||||| ||| ||||| || |||||||||||||| ||| |||||||||||||||||   |||||||    
T  12965129 gatctacattgattcagtcttgttgatgtttttgagaaag-aaagtgaagttt-aagtgttacctgtggttttaatcggagatttcgaaccggaatcttc 12965226  T
Q  223 ggaaaa--cttcgatttgattctgtttcgttgacttcgttc-ttgaatccgaaaataaatcggtgtt 286  Q
     |||||  |||  || ||||||||||| ||||| ||| | | || || |||||||||||||||||||    
T  12965227 agaaaaagcttgaatctgattctgttt-gttgatttcttgctttaaaaccgaaaataaatcggtgtt 12965292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Complemental strand, 12616014 - 12615984
Alignment:
Q  258 gttcttgaatccgaaaataaatcggtgttct 288  Q
    |||||||||||||||||||||||||||||||    
T  12616014 gttcttgaatccgaaaataaatcggtgttct 12615984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 18816540 - 18816569
Alignment:
Q  218 tcttcggaaaacttcgatttgattctgttt 247  Q
    ||||||||||||||||||||||||||||||    
T  18816540 tcttcggaaaacttcgatttgattctgttt 18816569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 26912635 - 26912569
Alignment:
Q  220 ttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtgttct 288  Q
    |||||| | |||||||||||| |||||  ||||| ||||||||||||||||||||  || |||||||||    
T  26912635 ttcggagatcttcgatttgatgctgtt--gttgatttcgttcttgaatccgaaaacgaaccggtgttct 26912569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 26929922 - 26929856
Alignment:
Q  220 ttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtgttct 288  Q
    |||||| | |||||||||||| |||||  ||||| ||||||||||||||||||||  || |||||||||    
T  26929922 ttcggagatcttcgatttgatgctgtt--gttgatttcgttcttgaatccgaaaacgaaccggtgttct 26929856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 20154882 - 20154826
Alignment:
Q  183 ttacctgtgatttaatcggagatttc-gaacgaaaatcttcggaaaacttcgatttg 238  Q
    ||||||| |||||||||||||||||  ||  |||| |||||||||||||||||||||    
T  20154882 ttacctgagatttaatcggagatttttgatggaaattcttcggaaaacttcgatttg 20154826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 22177950 - 22178006
Alignment:
Q  183 ttacctgtgatttaatcggagatttc-gaacgaaaatcttcggaaaacttcgatttg 238  Q
    ||||||| |||||||||||||||||  ||  |||| |||||||||||||||||||||    
T  22177950 ttacctgagatttaatcggagatttttgatggaaattcttcggaaaacttcgatttg 22178006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 124 - 294
Target Start/End: Original strand, 28167358 - 28167528
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 223  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28167358 gatctacattgattcgttcttgttattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 28167457  T
Q  224 gaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtgttctggctgg 294  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28167458 gaaaacttcgatctgattctgtttcgttgatttcgttcttgaatccgaaaataaatcggtgttctggctgg 28167528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 19703432 - 19703354
Alignment:
Q  206 ttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtg 284  Q
    ||||||| |||||||||||||||||| | |||||||||||||||||||  | ||||||| |||||||||||||||||||    
T  19703432 ttcgaacaaaaatcttcggaaaactttggtttgattctgtttcgttgatgttgttcttgtatccgaaaataaatcggtg 19703354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 29941378 - 29941276
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||||||||||||||||||||| | | | ||  |||| ||||||||||||||| ||| ||||| ||    |||||| |||||||||||||||    
T  29941378 ttacctgtgatttaatcggagatttcgaacaagattttttagaaatcttcgatttgattctattt-gttgatttttgacttgaaaccgaaaataaatcgg 29941280  T
Q  283 tgtt 286  Q
    ||||    
T  29941279 tgtt 29941276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 29990532 - 29990430
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||||||||||||||||||||| | | | ||  |||| ||||||||||||||| ||| ||||| ||    |||||| |||||||||||||||    
T  29990532 ttacctgtgatttaatcggagatttcgaacaagattttttagaaatcttcgatttgattctattt-gttgatttttgacttgaaaccgaaaataaatcgg 29990434  T
Q  283 tgtt 286  Q
    ||||    
T  29990433 tgtt 29990430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 28167249 - 28167288
Alignment:
Q  16 gttttcacaaataaagcttgaatcaacatagatctaaaga 55  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  28167249 gttttcacaaataaagcttgaatcaacgtagatctaaaga 28167288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 1987108 - 1987181
Alignment:
Q  215 aaatcttcggaaaacttcgatttgattctgtttcgttga-cttcgttcttgaatccgaaaataaatcggtgttct 288  Q
    ||||||||||||||||||||||||||||||||| |||||  |||   |||||| ||||||| |||||||||||||    
T  1987108 aaatcttcggaaaacttcgatttgattctgttt-gttgattttctgacttgaaaccgaaaaaaaatcggtgttct 1987181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 15370302 - 15370238
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgttt 247  Q
    |||| ||||||||||||||||||||||||| | | | ||  |||| |||||||||||||||||||    
T  15370302 ttacatgtgatttaatcggagatttcgaacaagattttttagaaatcttcgatttgattctgttt 15370238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 19446142 - 19446077
Alignment:
Q  218 tcttcggaaaacttcgatttgattctgtttcgttgacttcg-ttcttgaatccgaaaataaatcggt 283  Q
    |||||||||||||||||||||||||||||| || || || | | | |||||||||||||||||||||    
T  19446142 tcttcggaaaacttcgatttgattctgttt-gtggattttgctgcgtgaatccgaaaataaatcggt 19446077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 19447967 - 19447902
Alignment:
Q  218 tcttcggaaaacttcgatttgattctgtttcgttgacttcg-ttcttgaatccgaaaataaatcggt 283  Q
    |||||||||||||||||||||||||||||| || || || | | | |||||||||||||||||||||    
T  19447967 tcttcggaaaacttcgatttgattctgttt-gtggattttgctgcgtgaatccgaaaataaatcggt 19447902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 124 - 292
Target Start/End: Original strand, 16654122 - 16654290
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 223  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16654122 gatctacattgattcgttcttgttattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 16654221  T
Q  224 gaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtgttctggct 292  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16654222 gaaaacttcgatttgattatgtttcgttgatttcgttcttgaatccgaaaataaatcggtgttctggct 16654290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 21084736 - 21084658
Alignment:
Q  206 ttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtg 284  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||   | |||||||||||||||||||||||||||    
T  21084736 ttcgaacgaaaatcttcggaaaactttggtttgattctgtttcgttgttgttgttcttgaatccgaaaataaatcggtg 21084658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 16229431 - 16229329
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||| ||||||||||||||||||||| | | | ||  |||| ||||||||||||||||||| ||||| ||    |||||| |||||||||||||||    
T  16229431 ttacctgttatttaatcggagatttcgaacaagattttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatcgg 16229333  T
Q  283 tgtt 286  Q
    ||||    
T  16229332 tgtt 16229329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 20469848 - 20469747
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||| ||||||||||||||||| || || ||  |||| ||||||||||||||||||| ||||| ||    |||||| |||||||||||||||    
T  20469848 ttacctgtgattcaatcggagatttcgaac-aagatttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatcgg 20469751  T
Q  283 tgtt 286  Q
    ||||    
T  20469750 tgtt 20469747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 20540584 - 20540483
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||| ||||||||||||||||| || || ||  |||| ||||||||||||||||||| ||||| ||    |||||| |||||||||||||||    
T  20540584 ttacctgtgattcaatcggagatttcgaac-aagatttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatcgg 20540487  T
Q  283 tgtt 286  Q
    ||||    
T  20540486 tgtt 20540483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 31448805 - 31448844
Alignment:
Q  16 gttttcacaaataaagcttgaatcaacatagatctaaaga 55  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  31448805 gttttcacaaataaagcttgaatcaacgtagatctaaaga 31448844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 15817639 - 15817704
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacga-aaatcttcggaaaacttcgatttgattctgttt 247  Q
    |||||||||||||||||||||||||||||| | |||  ||  |||| |||||||||||||||||||    
T  15817639 ttacctgtgatttaatcggagatttcgaacaagaaacttttagaaatcttcgatttgattctgttt 15817704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 16654015 - 16654052
Alignment:
Q  18 tttcacaaataaagcttgaatcaacatagatctaaaga 55  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16654015 tttcacaaataaagcttgaatcaacgtagatctaaaga 16654052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 9187325 - 9187425
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaa-tgaagattcaagtgttacctgtgattt-aatcggagatttcgaacgaaaatctt 221  Q
    |||||||||||||||| |||| ||  |||| ||||||||| |||  ||||| || | |||||||||||| ||| |||||||||||| ||||||| |||||    
T  9187325 gatctacattgattcggtcttgttgatgtttttgagaaagaaaaggtgaagttt-atgtgttacctgtggttttaatcggagattttgaacgaagatctt 9187423  T
Q  222 cg 223  Q
    ||    
T  9187424 cg 9187425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 13482677 - 13482706
Alignment:
Q  218 tcttcggaaaacttcgatttgattctgttt 247  Q
    ||||||||||||||||||||||||||||||    
T  13482677 tcttcggaaaacttcgatttgattctgttt 13482706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 21646736 - 21646765
Alignment:
Q  218 tcttcggaaaacttcgatttgattctgttt 247  Q
    ||||||||||||||||||||||||||||||    
T  21646736 tcttcggaaaacttcgatttgattctgttt 21646765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 124 - 294
Target Start/End: Original strand, 10116825 - 10116995
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 223  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10116825 gatctacattgattcattcttgttattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 10116924  T
Q  224 gaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtgttctggctgg 294  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10116925 gaaaacctcgatttgattctgtttcgttgatttcgttcttgaatccgaaaataaatcggtgttctggctgg 10116995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 124 - 283
Target Start/End: Original strand, 21694369 - 21694527
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 223  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21694369 gatctacattgattcgttcttgttattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaaacggagatttcgaacgaaaatcttcg 21694468  T
Q  224 gaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggt 283  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  21694469 gaaaacttcgatctgatt-tgtttcgttgatttcgttattgaatccgaaaataaatcggt 21694527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 124 - 283
Target Start/End: Original strand, 21709098 - 21709257
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 223  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  21709098 gatctacattgattcgttcttgttattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaaacggagatttcaaacgaaaatcttcg 21709197  T
Q  224 gaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggt 283  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  21709198 gaaaacttcgatctgattttgtttcgttgatttcgttattgaatccgaaaataaatcggt 21709257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 294
Target Start/End: Original strand, 19447592 - 19447703
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||||||||||||||||||||| | | | ||  |||| ||||||||||||||||||| ||||| ||    |||||| |||||||||||||||    
T  19447592 ttacctgtgatttaatcggagatttcgaacaagattttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatcgg 19447690  T
Q  283 tg-ttctggctgg 294  Q
    || ||||||||||    
T  19447691 tgtttctggctgg 19447703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 294
Target Start/End: Original strand, 19462402 - 19462513
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||||||||||||||||||||| | | | ||  |||| ||||||||||||||||||| ||||| ||    |||||| |||||||||||||||    
T  19462402 ttacctgtgatttaatcggagatttcgaacaagattttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatcgg 19462500  T
Q  283 tg-ttctggctgg 294  Q
    || ||||||||||    
T  19462501 tgtttctggctgg 19462513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 288
Target Start/End: Complemental strand, 27686549 - 27686492
Alignment:
Q  229 cttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtgttct 288  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  27686549 cttcgatttgatgctgtt--gttgacttcgttcttgaatccgaaaataaatcggtgttct 27686492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 32680449 - 32680347
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||||||||||||||||||||| | | | ||  |||| ||||||||||||||||||| ||||| ||    |||||| |||||||||||||||    
T  32680449 ttacctgtgatttaatcggagatttcgaactagattttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatcgg 32680351  T
Q  283 tgtt 286  Q
    ||||    
T  32680350 tgtt 32680347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 10116716 - 10116755
Alignment:
Q  16 gttttcacaaataaagcttgaatcaacatagatctaaaga 55  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  10116716 gttttcacaaataaagcttgaatcaatgtagatctaaaga 10116755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 124 - 283
Target Start/End: Complemental strand, 16035575 - 16035416
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 223  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16035575 gatctacattgattcgttcttgttattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaaacggagatttcgaacgaaaatcttcg 16035476  T
Q  224 gaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggt 283  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  16035475 gaaaacttcgatctgattctgtttcgttgatttcgttcttgaatccgaaaataaatcggt 16035416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 124 - 263
Target Start/End: Complemental strand, 16050295 - 16050156
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 223  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16050295 gatctacattgattcgttcttgttattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaaacggagatttcgaacgaaaatcttcg 16050196  T
Q  224 gaaaacttcgatttgattctgtttcgttgacttcgttctt 263  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  16050195 gaaaacttcgatctgattctgtttcgttgatttcgttctt 16050156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 294
Target Start/End: Complemental strand, 10850623 - 10850512
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||||||||||||||||||||||| |   ||  |||| ||||||||||||||||||| ||||| ||    |||||| |||||||||||||||    
T  10850623 ttacctgtgatttaatcggagatttcgaacgagatcttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatcgg 10850525  T
Q  283 tg-ttctggctgg 294  Q
    || ||||||||||    
T  10850524 tgtttctggctgg 10850512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 294
Target Start/End: Original strand, 13896527 - 13896638
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||||||||||||||||||||| | | | ||  |||| ||||||||||||||||||| ||||| ||    |||||| ||||||||||||||     
T  13896527 ttacctgtgatttaatcggagatttcgaacaagattttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatcgt 13896625  T
Q  283 tg-ttctggctgg 294  Q
    || ||||||||||    
T  13896626 tgtttctggctgg 13896638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 283
Target Start/End: Original strand, 30242968 - 30243100
Alignment:
Q  150 tgttcttgagaaaggaaaatgaagattcaagtgttacctgtgattt--aatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgttt 247  Q
    |||||||||||||| || |||||| || | || |||||||||||||  | | ||||||||||||| || |||||||||||||||||||||||||||||||    
T  30242968 tgttcttgagaaagaaacatgaagtttga-gt-ttacctgtgatttttagttggagatttcgaac-aagatcttcggaaaacttcgatttgattctgttt 30243064  T
Q  248 cgttga-cttcgttcttgaatccgaaaataaatcggt 283  Q
     | |||  |||   |||||||||||||||||||||||    
T  30243065 -gctgattttctgacttgaatccgaaaataaatcggt 30243100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 4946891 - 4946809
Alignment:
Q  200 ggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgact-tcgttcttgaatccgaaaataaatcggt 283  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||| ||||| | ||   |||||||||||||||||||||||    
T  4946891 ggagatttcgaac-aagttcttcggaaaacttcgatttgattctgttt-gttgattatctggcttgaatccgaaaataaatcggt 4946809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 15005977 - 15006026
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaag 173  Q
    ||||||||||| ||||| ||| ||| ||||||||||||||||| ||||||    
T  15005977 gatctacattgtttcgtccttgttactgttcttgagaaaggaagatgaag 15006026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 23006076 - 23006105
Alignment:
Q  218 tcttcggaaaacttcgatttgattctgttt 247  Q
    ||||||||||||||||||||||||||||||    
T  23006076 tcttcggaaaacttcgatttgattctgttt 23006105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 124 - 283
Target Start/End: Original strand, 17743 - 17902
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcg 223  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17743 gatctacattgattcgttcttgttattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaaacggagatttcgaacgaaaatcttcg 17842  T
Q  224 gaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggt 283  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  17843 gaaaacttcgatctgattatgtttcgttgatttcgttattgaatccgaaaataaatcggt 17902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 26140414 - 26140514
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||| |||||| || ||||||| | || ||||||||| ||||||||| |||||||||||||||||||||  | |||||||||||||||||||||||||    
T  26140414 ttacctctgatttgattggagatt-caaaagaaaatcttaggaaaactttgatttgattctgtttcgttgatgttgttcttgaatccgaaaataaatcgg 26140512  T
Q  283 tg 284  Q
    ||    
T  26140513 tg 26140514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 16279899 - 16279797
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||||||||||||||||||||| | | | ||  |||| ||||||||||||||||||| ||||| ||    |||||| |||||||||||||||    
T  16279899 ttacctgtgatttaatcggagatttcgaacaagattttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatcgg 16279801  T
Q  283 tgtt 286  Q
    ||||    
T  16279800 tgtt 16279797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 18466508 - 18466610
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcgg 282  Q
    |||||||||||||||||||||||||||||| | | | ||  |||| ||||||||||||||||||| ||||| ||    |||||| |||||||||||||||    
T  18466508 ttacctgtgatttaatcggagatttcgaacaagattttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatcgg 18466606  T
Q  283 tgtt 286  Q
    ||||    
T  18466607 tgtt 18466610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 15218390 - 15218351
Alignment:
Q  16 gttttcacaaataaagcttgaatcaacatagatctaaaga 55  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15218390 gttttcacaaataaagcttgaatcaacatagatctaaaga 15218351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 20762132 - 20762036
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatc 280  Q
    |||||||||||||||||||||||||||||| | | | ||  |||| ||||||||||||||||||| ||||| ||    |||||| |||||||||||||    
T  20762132 ttacctgtgatttaatcggagatttcgaacaagattttttagaaatcttcgatttgattctgttt-gttgatttttgacttgaaaccgaaaataaatc 20762036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 15237140 - 15237101
Alignment:
Q  16 gttttcacaaataaagcttgaatcaacatagatctaaaga 55  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  15237140 gttttcacaaataaagcttgaatcaacgtagatctaaaga 15237101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 22729014 - 22729084
Alignment:
Q  218 tcttcggaaaacttcgatttgattctgtttcgttga-cttcgttcttgaatccgaaaataaatcggtgttct 288  Q
    |||||||||||||||||||||||||||||| || ||  |||   |||||| |||||||||||||||||||||    
T  22729014 tcttcggaaaacttcgatttgattctgttt-gtggattttctgacttgaaaccgaaaataaatcggtgttct 22729084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 15270367 - 15270416
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaag 173  Q
    ||||||||||| ||||| ||| ||| ||||||||||||||||| ||||||    
T  15270367 gatctacattgtttcgtccttgttactgttcttgagaaaggaagatgaag 15270416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 15300709 - 15300758
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaag 173  Q
    ||||||||||| ||||| ||| ||| ||||||||||||||||| ||||||    
T  15300709 gatctacattgtttcgtccttgttactgttcttgagaaaggaagatgaag 15300758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 21338763 - 21338835
Alignment:
Q  212 cgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtg 284  Q
    |||||||||||||||||| | | ||||||||||||||||||   | |||||||||||||||||||||||||||    
T  21338763 cgaaaatcttcggaaaaccttggtttgattctgtttcgttgctgttgttcttgaatccgaaaataaatcggtg 21338835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 21378724 - 21378796
Alignment:
Q  212 cgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtg 284  Q
    |||||||||||||||||| | | ||||||||||||||||||   | |||||||||||||||||||||||||||    
T  21378724 cgaaaatcttcggaaaaccttggtttgattctgtttcgttgctgttgttcttgaatccgaaaataaatcggtg 21378796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 286
Target Start/End: Complemental strand, 25745711 - 25745577
Alignment:
Q  150 tgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcg 249  Q
    |||||||||||||| || |||||| || | || ||||||| ||| |||||||||||||||||| | | | ||  |||| ||||||||||||||||||| |    
T  25745711 tgttcttgagaaagaaagatgaagtttga-gttttacctgagatgtaatcggagatttcgaacaagattttttagaaatcttcgatttgattctgttt-g 25745614  T
Q  250 ttgacttcgttcttgaatccgaaaataaatcggtgtt 286  Q
    |||| ||    |||||| |||||||||||||||||||    
T  25745613 ttgatttttgacttgaaaccgaaaataaatcggtgtt 25745577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 33240886 - 33240814
Alignment:
Q  212 cgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtg 284  Q
    |||||||||||||||||  | | ||||||||||||||||||   | |||||||||||||||||||||||||||    
T  33240886 cgaaaatcttcggaaaatcttggtttgattctgtttcgttgctgttgttcttgaatccgaaaataaatcggtg 33240814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 33270230 - 33270158
Alignment:
Q  212 cgaaaatcttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtg 284  Q
    |||||||||||||||||  | | ||||||||||||||||||   | |||||||||||||||||||||||||||    
T  33270230 cgaaaatcttcggaaaatcttggtttgattctgtttcgttgctgttgttcttgaatccgaaaataaatcggtg 33270158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 17896426 - 17896387
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaag 163  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17896426 gatctacattgattcgttcttattattgttcttgagaaag 17896387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 19908079 - 19908136
Alignment:
Q  229 cttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtgttct 288  Q
    |||||||||||| ||||| |  ||| ||||||||||||||||||||||||||||||||||    
T  19908079 cttcgatttgatgctgttgc--tgatttcgttcttgaatccgaaaataaatcggtgttct 19908136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 15016828 - 15016784
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaa 227  Q
    |||||||||||||||||||||||||||||| | | ||||||||||    
T  15016828 ttacctgtgatttaatcggagatttcgaacaagattcttcggaaa 15016784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 286
Target Start/End: Original strand, 28505138 - 28505301
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaagattcaagtgttacctgtgattt-aatcggagatttcgaacgaaaatcttc 222  Q
    |||||||||||||||  |||| ||  |||| ||||||||| ||| ||||| || |||||||||||||| ||| |||||||||||||||||   |||||||    
T  28505138 gatctacattgattcagtcttgttgatgtttttgagaaag-aaagtgaagttt-aagtgttacctgtggttttaatcggagatttcgaaccggaatcttc 28505235  T
Q  223 ggaaaa--cttcgatttgattctgtttcgttgacttcgttc-ttgaatccgaaaataaatcggtgtt 286  Q
     |||||  |||  || ||||||||||| ||||| ||| | | || || |||||||||||||||||||    
T  28505236 agaaaaagcttgaatctgattctgttt-gttgatttcttgctttaaaaccgaaaataaatcggtgtt 28505301  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 11343801 - 11343850
Alignment:
Q  124 gatctacattgattcgttcttattattgttcttgagaaaggaaaatgaag 173  Q
    ||||||||||| ||||| ||| ||| ||||||||||||||||| ||||||    
T  11343801 gatctacattgtttcgtccttgttactgttcttgagaaaggaagatgaag 11343850  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 12481592 - 12481621
Alignment:
Q  218 tcttcggaaaacttcgatttgattctgttt 247  Q
    ||||||||||||||||||||||||||||||    
T  12481592 tcttcggaaaacttcgatttgattctgttt 12481621  T

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Target: scaffold0170 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 288
Target Start/End: Complemental strand, 520 - 356
Alignment:
Q  124 gatctacattgattcgttcttattattgttctt-gagaaaggaaa-atgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaa--tc 219  Q
    |||||||||||||||||||||||||||||| || ||||||| ||| |||| | || | || |||||||||||||  | | | ||||||||  |||   ||    
T  520 gatctacattgattcgttcttattattgttttttgagaaagaaaagatgaggtttga-gt-ttacctgtgattttctggaaaatttcgaatcaaagattc 423  T
Q  220 ttcggaaaacttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtgttct 288  Q
    ||| || | |||||||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||    
T  422 ttcagagatcttcgatttgatgctgtt--gttgatttcgttcttgaatccgaaaataaatcggtgttct 356  T

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Target: scaffold0954 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 1516 - 1429
Alignment:
Q  200 ggagatttcgaacgaaaatcttcggaaaacttcgatttgattctgtttcgttga-cttcgttcttgaatccgaaaataaatcggtgttct 288  Q
    ||||||||||||| || ||||||||||||||||||||||||| ||||| |||||  |||   |||||| |||||||||||||||||||||    
T  1516 ggagatttcgaac-aagatcttcggaaaacttcgatttgattatgttt-gttgattttctgacttgaaaccgaaaataaatcggtgttct 1429  T

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Target: scaffold0322 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 16678 - 16608
Alignment:
Q  218 tcttcggaaaacttcgatttgattctgtttcgttga-cttcgttcttgaatccgaaaataaatcggtgttct 288  Q
    |||||||||||||||||||||||||||||| |||||  |||   |||||| |||||||||||||||||||||    
T  16678 tcttcggaaaacttcgatttgattctgttt-gttgattttctgacttgaaaccgaaaataaatcggtgttct 16608  T

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Target: scaffold0021 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 97726 - 97657
Alignment:
Q  215 aaatcttcggaaaacttcgatttgattctgtttcgttga-cttcgttcttgaatccgaaaataaatcggtg 284  Q
    ||||||||||||||||||||||||||||||||| |||||  |||   |||||| |||||||||||||||||    
T  97726 aaatcttcggaaaacttcgatttgattctgttt-gttgattttctgacttgaaaccgaaaataaatcggtg 97657  T

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Target: scaffold0021; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 178639 - 178570
Alignment:
Q  215 aaatcttcggaaaacttcgatttgattctgtttcgttga-cttcgttcttgaatccgaaaataaatcggtg 284  Q
    ||||||||||||||||||||||||||||||||| |||||  |||   |||||| |||||||||||||||||    
T  178639 aaatcttcggaaaacttcgatttgattctgttt-gttgattttctgacttgaaaccgaaaataaatcggtg 178570  T

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Target: scaffold1658 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1658
Description:

Target: scaffold1658; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 1028 - 952
Alignment:
Q  150 tgttcttgagaaaggaaaatgaagattcaagtgttacctgtgatttaatcggagatttcgaacgaaaatcttcggaaaa 228  Q
    |||||||||||||| || |||||| || | || ||||||||||||| || ||||||| ||||||||||||||| |||||    
T  1028 tgttcttgagaaagaaagatgaagtttga-gttttacctgtgatttgattggagatt-cgaacgaaaatcttcagaaaa 952  T

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Target: scaffold1376 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1376
Description:

Target: scaffold1376; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 741 - 712
Alignment:
Q  218 tcttcggaaaacttcgatttgattctgttt 247  Q
    ||||||||||||||||||||||||||||||    
T  741 tcttcggaaaacttcgatttgattctgttt 712  T

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Target: scaffold0211 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 4846 - 4875
Alignment:
Q  183 ttacctgtgatttaatcggagatttcgaac 212  Q
    ||||||||||||||||||||||||||||||    
T  4846 ttacctgtgatttaatcggagatttcgaac 4875  T

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Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 36769 - 36732
Alignment:
Q  16 gttttcacaaataaagcttgaatcaacatagatctaaa 53  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  36769 gttttcacaaatagagcttgaatcaacgtagatctaaa 36732  T

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Target: scaffold0049; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 36657 - 36625
Alignment:
Q  124 gatctacattgattcgttcttattattgttctt 156  Q
    ||||||||||||||||||||| |||||||||||    
T  36657 gatctacattgattcgttcttgttattgttctt 36625  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 155481 - 155538
Alignment:
Q  229 cttcgatttgattctgtttcgttgacttcgttcttgaatccgaaaataaatcggtgttct 288  Q
    |||||||||||| |||||  ||||| ||||||||||||||||||||  || |||||||||    
T  155481 cttcgatttgatgctgtt--gttgatttcgttcttgaatccgaaaacgaaccggtgttct 155538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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