View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_low_17 (Length: 347)
Name: NF9920_low_17
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 5241731 - 5241591
Alignment:
| Q |
187 |
tattccatataaaaggttgttgctaaatcttgggaaaaaatggagggttttataatttgccaaatatggttaagaaccattgtggcacaagaaacataac |
286 |
Q |
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| T |
5241731 |
tattccatataaaaggttgttgctaaatct--ggaaaaaatggagggttttataatttgtcaaatatggttaa-aaccattg-gggacaaaacgcatacc |
5241636 |
T |
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| Q |
287 |
attagctttgtcagttttgtacaaaacaccaccattcgtgtgttt |
331 |
Q |
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| T |
5241635 |
attagttttgtcagttttgttcaaaacaccaacattcgtgggttt |
5241591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 183 - 297
Target Start/End: Original strand, 5242081 - 5242193
Alignment:
| Q |
183 |
attgtattccatataaaaggttgttgctaaatcttgggaaaaaatggagggttttataatttgccaaatatggttaagaaccattgtggcacaagaaaca |
282 |
Q |
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| T |
5242081 |
attgtattccatataaaaggtttttgctaaaaatggg--aaaaatagagggttttataatttgccaaatatggttaagaaccattgtggcacaaaaagca |
5242178 |
T |
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| Q |
283 |
taacattagctttgt |
297 |
Q |
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| T |
5242179 |
taacattagttttgt |
5242193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 5186208 - 5186124
Alignment:
| Q |
184 |
ttgtattccatataaaa-ggttgttgctaaatcttgggaaaaaatggagggttttataatttgccaaatatggttaagaaccattgt |
269 |
Q |
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| T |
5186208 |
ttgtattccatataaaaaggttgttgctaaatctagg--aaaaagggagggttttataatttgccaaatatggttaagaaccattgt |
5186124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 5186992 - 5187052
Alignment:
| Q |
183 |
attgtattccatataaaaggttgttgctaaatcttgggaaaaaatggagggttttataattt |
244 |
Q |
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| T |
5186992 |
attgtattccatataaaaggttgtagctaaatc-tgggaaaaaatggagggttttataattt |
5187052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 5186595 - 5186663
Alignment:
| Q |
7 |
tataactttttagcaaatggatttgatggttgaaacctaatcaaaatgaagcgacatgttgattcaaaa |
75 |
Q |
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| T |
5186595 |
tataactttttaggaaatggctttctttgttgcaacctaatcaaaatgaagcgacatgttgattcaaaa |
5186663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 5241997 - 5241950
Alignment:
| Q |
7 |
tataactttttagcaaatggatttgatggttgaaacctaatcaaaatg |
54 |
Q |
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| T |
5241997 |
tataagtttttagcaaatgactttgatggttgcaacctaatcaaaatg |
5241950 |
T |
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