View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_low_18 (Length: 346)
Name: NF9920_low_18
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 42474622 - 42474956
Alignment:
| Q |
1 |
gaagctttagactacatacaagttagtccatgatgcacttatggagcatttttgtacatcatttctttttgtcattgaagcttttgagcattatcggata |
100 |
Q |
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| T |
42474622 |
gaagctttagactacatacaagttattccatgatgcacttatggagcatttttgtacatcatttctttttgtcattgaagcttttgagcattatcggata |
42474721 |
T |
|
| Q |
101 |
catgcttttgtaggctgtaaacatttacggagctactggtctatgctttacttgtgattttatatatacatgttcaattttttcctagattttcttagtc |
200 |
Q |
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| T |
42474722 |
catgcttttgtaggctgtaaacatttacggagctactggtctatgctttacttgtgattttatatatacatgttcaattttttcctagattttcttagtc |
42474821 |
T |
|
| Q |
201 |
ttttcttagctacgtgcaaattattccatgatgcatgcaatcttattcttgttgagtcatatgcaactcttggtttttccaatggttacatgtgctttag |
300 |
Q |
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| T |
42474822 |
ttttcttagctacgtgcaaattattccatgatgcatgcaatcttattcttgttgagtcatatgcaactcttggtttttccaatggttacatgtgctttag |
42474921 |
T |
|
| Q |
301 |
tatgtactgactactgagtacagttgaatgttcat |
335 |
Q |
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| T |
42474922 |
tatgtactggctactgagtacagttgaatgttcat |
42474956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 42467966 - 42468254
Alignment:
| Q |
1 |
gaagctttagactacatacaagttagtccatgatgcacttatggagcatttttgtacatcatttctttttgtcattgaagcttttgagcattatcggata |
100 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||| |||||||| | |||||||||||||||||| ||||||||| ||||| |
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| T |
42467966 |
gaagctttagactacatacaagttattccatgatacacttatagagcattt-------------cattttgtcattgaagctttcgagcattataggata |
42468052 |
T |
|
| Q |
101 |
catgcttttgtaggctgtaaacatttacggagctactggtctatgctttacttgtgattttatatatacatgttcaattttttcctagattttcttagtc |
200 |
Q |
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| T |
42468053 |
tattcttttgtaggctgtaaacatttatggagctactggtctatgcttttcttgtgattttatttataaatgttcaattttttcatagattttcttagtc |
42468152 |
T |
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| Q |
201 |
ttttcttagctacgtgcaaattattccatgatgcatgcaatcttattcttgttgagtcatatgcaactctt--ggtttttccaatggttacatgtgcttt |
298 |
Q |
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| T |
42468153 |
ttttcttagctgcgtgcaaattattccatgatgcatgcaatcttattcttgttgagtc--atgcaaatcttaaggtttttccaatggttacatgtgcttt |
42468250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 96 - 302
Target Start/End: Original strand, 42480200 - 42480414
Alignment:
| Q |
96 |
ggatacatgcttttgtaggctgtaaacatttacggagctactggtctatgctttacttgtgattttatatatacatgttca-----attttttcctagat |
190 |
Q |
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||||||||||||| |||||| |||||||||| ||||||| |||| |||||||||||||| |||| || |||||||||||| | ||||||||| || |
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| T |
42480200 |
ggatacatgctttattaggctataaacatttatggagctattggtttatgctttacttgttatttgatttatacatgttcaaatttaatttttcctaaat |
42480299 |
T |
|
| Q |
191 |
tttcttagtctt-ttcttagctacgtgcaaattattccatgatgcatgcaatcttattcttgttgagtcatatgcaactctt--ggtttttccaatggtt |
287 |
Q |
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|||| ||||||| || |||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||| |
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| T |
42480300 |
tttcctagtcttattgttagctacaaacaaactatcccatgatgcatgcaatcttattcttgttgagttatatgcaaatcttaaggtttctccaatggtt |
42480399 |
T |
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| Q |
288 |
acatgtgctttagta |
302 |
Q |
| |
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|||||||| |||||| |
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| T |
42480400 |
acatgtgcattagta |
42480414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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