View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_low_19 (Length: 314)
Name: NF9920_low_19
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 39 - 301
Target Start/End: Original strand, 408241 - 408503
Alignment:
| Q |
39 |
gcaagggaatgaagaaagctgatgaatcaaagaagggaggatagaatgcaaagaggtaaagggaagagcaataagaaatgaaggttttaatttatgatag |
138 |
Q |
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| T |
408241 |
gcaatggaatgaagaaagctgatgaatcaaagaagggaggatagaatgcaaagaggtaaagggaagagcaataagaaatgaaggttttaatttatgatag |
408340 |
T |
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| Q |
139 |
aagaagtggagggtttcattgattgtaattattattatgaatcttatttctatagtctccatataaatggtttctggaaagcattttacggatagctcct |
238 |
Q |
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| T |
408341 |
aagaagtggagggtttcattgattgtaattattattatgaatcttatttctatagtctccatataaatggtttctggaaagcattttacggatagctcct |
408440 |
T |
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| Q |
239 |
tgttatgtttaatgtttgctcctggaaggagttgttaggtgttgtagtgtttgctttgagcct |
301 |
Q |
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| T |
408441 |
tgttatgtttaatgtttgctcctggaaggagttgttaggtgttgtagtgtttgctttgagcct |
408503 |
T |
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