View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_low_20 (Length: 310)
Name: NF9920_low_20
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 44926454 - 44926736
Alignment:
| Q |
19 |
aagttcctcctgacaatgcctttgagaagaacataagacgagagcttatctctccaaacgagataggggtgactttttcagatattggtgcattggatga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44926454 |
aagttcctcctgacaatgcctttgagaagaacataagacgagagcttatctctgcaaacgagataggggtgactttttcagatattggtgcattggatga |
44926553 |
T |
|
| Q |
119 |
cgttaaagaatcacttcaagaagcagttatgcttccccttagaagaccagatatattcaaaggggatggggttctgaagccatgtaaaggtgtattactt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44926554 |
cgttaaagaatcacttcaagaagcagttatgcttccccttagaagaccagatatattcaaaggggatggggttctgaagccatgtaaaggtgtattactt |
44926653 |
T |
|
| Q |
219 |
tttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcatcaatgtctctgc |
301 |
Q |
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| T |
44926654 |
tttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcatcaatgtctctgc |
44926736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 26 - 299
Target Start/End: Original strand, 44934901 - 44935174
Alignment:
| Q |
26 |
tcctgacaatgcctttgagaagaacataagacgagagcttatctctccaaacgagataggggtgactttttcagatattggtgcattggatgacgttaaa |
125 |
Q |
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||||||||||||||||||| | |||||||| |||||||||| || ||||||||||| |||||||||||||||||||||||| |||||||| |||||| |
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| T |
44934901 |
tcctgacaatgcctttgaggaatgcataagacaagagcttatccctgcaaacgagataaaggtgactttttcagatattggtgctttggatgatgttaaa |
44935000 |
T |
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| Q |
126 |
gaatcacttcaagaagcagttatgcttccccttagaagaccagatatattcaaaggggatggggttctgaagccatgtaaaggtgtattactttttggac |
225 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44935001 |
gaatcacttcaagaagcggttatgcttccccttagaagaccagatctattcaaaggtgatggggttctgaagccatgtaaaggtgtattgctttttggac |
44935100 |
T |
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| Q |
226 |
ctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcatcaatgtctct |
299 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44935101 |
ctcctggtacaggaaagacaatgcttgccaaggcaattgcaaatgaagctggagcaagtttcatcaatgtctct |
44935174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 26 - 299
Target Start/End: Original strand, 45988287 - 45988560
Alignment:
| Q |
26 |
tcctgacaatgcctttgagaagaacataagacgagagcttatctctccaaacgagataggggtgactttttcagatattggtgcattggatgacgttaaa |
125 |
Q |
| |
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||||||||||||||||||| | |||||||| |||||||||| || |||| ||||||| ||||||||||||||||||||||| |||||||| ||||| |
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| T |
45988287 |
tcctgacaatgcctttgaggaatgcataagacaagagcttatccctgcaaatgagatagaagtgactttttcagatattggtgctttggatgatattaaa |
45988386 |
T |
|
| Q |
126 |
gaatcacttcaagaagcagttatgcttccccttagaagaccagatatattcaaaggggatggggttctgaagccatgtaaaggtgtattactttttggac |
225 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
45988387 |
gaatcacttcaagaagcggttatgcttccccttagaagaccatatctattcaaaggcgatgggcttctgaagccatgtaaaggtgtattgctttttggac |
45988486 |
T |
|
| Q |
226 |
ctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcatcaatgtctct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
45988487 |
ctcctggtacaggaaagacaatgctcgcaaaggcaattgctaatgaatctggagcaagtttcatcaatgtctct |
45988560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 39716282 - 39716201
Alignment:
| Q |
211 |
tattactttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcatcaa |
292 |
Q |
| |
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|||| ||||| || || ||||| || ||||| |||||||| |||||||| | |||| |||||||||||||| ||||||||| |
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| T |
39716282 |
tattgcttttcggtccccctggcacgggaaaaacaatgcttgcaaaggctgtagcaactgaagctggagcaaatttcatcaa |
39716201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 298
Target Start/End: Complemental strand, 11094871 - 11094640
Alignment:
| Q |
64 |
ttatctctccaaacgagataggggtgactttttcagatattggtgcattggatgacgttaaagaatcacttcaagaagcagttatgcttccccttagaag |
163 |
Q |
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||||| || |||| |||||||| || || || ||||||| |||||||| ||||| | |||||||| |||||||| ||| ||||||||||||||||| |
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| T |
11094871 |
ttatccctgcaaatgagataggtgttacattcgcagatatcggtgcattagatgagataaaagaatcgcttcaagagctagtaatgcttccccttagaag |
11094772 |
T |
|
| Q |
164 |
accagatatattcaaaggggatggggttctgaagccatgtaaaggtgtattactttttggacctcctggtacaggaaagacaatgctcgcaaaggcaatt |
263 |
Q |
| |
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|||||| | |||||||| ||| |||| |||||||||| |||| |||||||||| || || |||||||| ||||| |||||||| |||||||| ||| |
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| T |
11094771 |
accagaccttttcaaagg---tggacttctaaagccatgtagaggtatattacttttcggtccacctggtaccggaaaaacaatgctagcaaaggcgatt |
11094675 |
T |
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| Q |
264 |
gcaaatgaagctggagcaagtttcatcaatgtctc |
298 |
Q |
| |
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|| |||||||| |||||||||||||| || ||||| |
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| T |
11094674 |
gcgaatgaagcaggagcaagtttcattaacgtctc |
11094640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 32199764 - 32199839
Alignment:
| Q |
86 |
ggtgactttttcagatattggtgcattggatgacgttaaagaatcacttcaagaagcagttatgcttccccttaga |
161 |
Q |
| |
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||||||||||||| ||||| ||||||| |||| || |||||||||||||||||||| ||||| |||||||||||| |
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| T |
32199764 |
ggtgactttttcatatattagtgcattaaatgatgtcaaagaatcacttcaagaagcggttatacttccccttaga |
32199839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 295
Target Start/End: Original strand, 2489637 - 2489742
Alignment:
| Q |
190 |
ttctgaagccatgtaaaggtgtattactttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcat |
289 |
Q |
| |
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|||| ||||| |||| ||| |||| || ||||| || ||||| |||||||| |||||||| |||||||| |||||||| || ||||||||||||||||| |
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| T |
2489637 |
ttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcat |
2489736 |
T |
|
| Q |
290 |
caatgt |
295 |
Q |
| |
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||||| |
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| T |
2489737 |
taatgt |
2489742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 41591320 - 41591244
Alignment:
| Q |
219 |
tttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcatcaatgt |
295 |
Q |
| |
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||||| |||||||| || || || |||||||| || ||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
41591320 |
tttgggcctcctggaactgggaaaacaatgctggcgaaggccattgcaaaggaagctggagcaagtttcattaatgt |
41591244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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