View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_low_22 (Length: 298)
Name: NF9920_low_22
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 50558073 - 50557809
Alignment:
| Q |
16 |
agagatggattagagcgacgctgtataactagagatctgaagtggggggttcctgttccacatgaaaaatatagtaataaggttagattttccattccat |
115 |
Q |
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| T |
50558073 |
agagatggattagagcgacgctgtataactagagatctgaagtggggggttcctgttccacatgaaaaatatagtaataaggttagattttccattccat |
50557974 |
T |
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| Q |
116 |
tgggtctttcaaaatgtccgttattttttctttcagtaattttataaattgttttctttgaattggaaggttttctatgtgtggtttgatgcgcctattg |
215 |
Q |
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| T |
50557973 |
tgggtctttcaaaatgtccgttattttttctttcagtaattttataaattgttttctttgaattggaaggttttctatgtgtggtttgatgcgcctattg |
50557874 |
T |
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| Q |
216 |
gttatatatcaatcactgcatgctacacacatgattgggagaaatggtggaaaaacccagagaat |
280 |
Q |
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| T |
50557873 |
gttatatatcaatcaccgcatgctacacacatgattgggagaaatggtggaaaaacccagagaat |
50557809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 46 - 280
Target Start/End: Complemental strand, 29770360 - 29770134
Alignment:
| Q |
46 |
agagatctgaagtggggggttcctgttccacatgaaaaatatagtaataaggttagattttccattccattgggtctttcaaaatgtccgttattttttc |
145 |
Q |
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| T |
29770360 |
agagatctgaagtggggggttcctgttccacatgaaaaatacagtgacaaggtaag-ttttccctt----tgggtctttcaaaatgtcggttgttttt-c |
29770267 |
T |
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| Q |
146 |
tttcagtaattttataaattgttttctttgaattggaaggttttctatgtgtggtttgatgcgcctattggttatatatcaatcactgcatgctacacac |
245 |
Q |
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| T |
29770266 |
attcactaatttta--aactacattctttaaattggaaggtgttctatgtttggtttgatgctccgattggatatatatcaatcacggcaggctacacac |
29770169 |
T |
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| Q |
246 |
atgattgggagaaatggtggaaaaacccagagaat |
280 |
Q |
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| T |
29770168 |
gtgattgggagaaatggtggaaaaaccctgagaat |
29770134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 50568219 - 50568052
Alignment:
| Q |
20 |
atggattagagcgacgctgtataactagagatctgaagtggggggttcctgttccacatgaaaaatatagtaataaggttagattttccattccattggg |
119 |
Q |
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| T |
50568219 |
atggattagagcgacgctgtattaccagagatctgaagtggcgggtttctgttccgaatgaaaattgcagtaacaaggttagcttttccattt-----gg |
50568125 |
T |
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| Q |
120 |
tctttcaaaatgtccgttattttttctttcagtaattttataaattgttttctttgaattggaaggttttctat |
193 |
Q |
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| T |
50568124 |
tctttcaaaatgtcatttattttt-cattcagtaattttataaatgattttctttaaattggaaggttttctat |
50568052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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