View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9920_low_26 (Length: 275)
Name: NF9920_low_26
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 46222737 - 46222644
Alignment:
| Q |
167 |
ataaaattctaatattaacaacgaacatattaatattgtcattttcctaaaaaagataatattaatatcgctattaaaaaagtgtatacacaca |
260 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46222737 |
ataaaattctaatattaacaaccaacatattaatattgtcattttcctaaaaaagataatattaatattgctattaaaaaagtgtatacacaca |
46222644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 46343665 - 46343586
Alignment:
| Q |
167 |
ataaaattctaatattaacaacgaacatattaatattgtcattttcctaaaaaagataatattaatatcgctattaaaaa |
246 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| || |||||||| |
|
|
| T |
46343665 |
ataaaattctaatattaacaaccaacatattaatattgtcattttcctaaaaaagaaaatattactattgccattaaaaa |
46343586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 157
Target Start/End: Complemental strand, 46222759 - 46222724
Alignment:
| Q |
122 |
ttgtaggttcaaccccatcacaataaaattctaata |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
46222759 |
ttgtaggttcaaccccatcacaataaaattctaata |
46222724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University