View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9920_low_30 (Length: 258)
Name: NF9920_low_30
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_30 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 8806986 - 8807239
Alignment:
| Q |
5 |
caaaaccatcaccaatatatccatcttcacaaacacatcttatgccacctttaactgctgtagcattcaccatatctgcattcttagcacaaatctcctt |
104 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8806986 |
caaaaccatcaccaacaaatccatcttgacaaacacaccttatgccacctttaactgctgtagcattcaccatatctgcattcttagcacaaatctcctt |
8807085 |
T |
|
| Q |
105 |
agaaaagttcctaggaataccaaattccaattttacccctcttttacctgaataagaccctctcaaaacagcccaactagaaaatcccctacatccaaat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8807086 |
agaaaagttcctaggaataccaaattccaattttacccctcttttacctgaataagaccctctcaaaacagcccaactagaaaatcccctacatccaaat |
8807185 |
T |
|
| Q |
205 |
tgtgaaaaaacagaaaacccttcaccaatgtgccatatactatgatcagaaagt |
258 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8807186 |
tgtgaaaaaacagaaaacccttcaccaatatgccatatactatgatcagaaagt |
8807239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 22920141 - 22920383
Alignment:
| Q |
5 |
caaaaccatcaccaatatatccatcttcacaaacacatcttatgccacctttaactgctgtagcattcaccatatctgcattcttagcacaaatctcctt |
104 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
22920141 |
caaacccatcaccaacatatccatcttgacaaacacaccttatgccacctttaactgttgtagcattcaccatatttgtgttcttagcacaaatctcctt |
22920240 |
T |
|
| Q |
105 |
agaaaagttcctaggaataccaaattccaattttacccctcttttacctgaataagaccctctcaaaacagcccaactagaaaatcccctacatccaaat |
204 |
Q |
| |
|
|||||||||| ||||||||| || |||||| |||||| ||||||||| |||||||||||| || ||||| |||||||||| ||||||| |
|
|
| T |
22920241 |
agaaaagttcataggaatacaaatttccaa-----------ttttacttgaataagaacctctcaaaacaaccaaactaaaaaatcccctgtatccaaac |
22920329 |
T |
|
| Q |
205 |
tgtgaaaaaacagaaaacccttcaccaatgtgccatatactatgatcagaaagt |
258 |
Q |
| |
|
|| ||||||| |||||||||||||| || ||||||||| ||| |||||||||| |
|
|
| T |
22920330 |
tgagaaaaaatagaaaacccttcacaaacatgccatatattattatcagaaagt |
22920383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University