View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9920_low_32 (Length: 244)
Name: NF9920_low_32
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_32 |
 | |
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| [»] scaffold0354 (1 HSPs) |
| | |
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| [»] scaffold0068 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 33347625 - 33347861
Alignment:
| Q |
1 |
tgcatttctgatagtcaatctgcatttgttgcaggtcgatctgtcctagataatgctatggcagccatagagatcattcattatatgaagtcgaaagtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33347625 |
tgcatttctgatagtcaatctgcatttgttccgggtcgatctatcctagataatgctatggcagccatagagatcattcattatatgaagtcgaaagtca |
33347724 |
T |
|
| Q |
101 |
aaggtatattgggagatgttgctcttaagctggatataagtaaagcgtatgacaaaattgattggagttatctgaaaagggttatgataaaaatgggttt |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
33347725 |
aaggtacattgggagatgttgctcttaagcttgacataagtaaagcgtatgacataattgattggagttatctgaaaaaggttatgataaaaatgggttt |
33347824 |
T |
|
| Q |
201 |
ttctgatagatggataaattggattatgatgtccatc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33347825 |
ttctgatagatggataaattggattatgatgtgcatc |
33347861 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 19112179 - 19111951
Alignment:
| Q |
1 |
tgcatttctgatagtcaatctgcatttgttgcaggtcgatctgtcctagataatgctatggcagccatagagatcattcattatatgaagtcgaaagtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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|
| T |
19112179 |
tgcatttctgatagtcaatctgcatttgttccgggtcgatctatcctagataatgctatggaagccatagagatcattcattatatggagtcgaaagtca |
19112080 |
T |
|
| Q |
101 |
aaggtatattgggagatgttgctcttaagctggatataagtaaagcgtatgacaaaattgattggagttatctgaaaagggttatgataaaaatgggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
19112079 |
aaggtatattgggagatgttgctcttaagcttgatataagtaaaacgtatgacataattgattggagttatttgaaaagggttatgataaaaatgggttt |
19111980 |
T |
|
| Q |
201 |
ttctgatagatggataaattggattatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19111979 |
ttctgatagatggataaattggattatga |
19111951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 26383757 - 26383521
Alignment:
| Q |
1 |
tgcatttctgatagtcaatctgcatttgttgcaggtcgatctgtcctagataatgctatggcagccatagagatcattcattatatgaagtcgaaagtca |
100 |
Q |
| |
|
||||||||| ||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
26383757 |
tgcatttctaatagtcaatttgcatttgttccgggtcgatctatcctagataatgctatggcagccatagagatcattcattatatgaagtcgaaactca |
26383658 |
T |
|
| Q |
101 |
aaggtatattgggagatgttgctcttaagctggatataagtaaagcgtatgacaaaattgattggagttatctgaaaagggttatgataaaaatgggttt |
200 |
Q |
| |
|
||| || ||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26383657 |
aagttacattgggagatgtttctcttaagcttgatataagtaaagcgtatgacagaattgattggagttatctgaaaagggttatgataaaaatgggttt |
26383558 |
T |
|
| Q |
201 |
ttctgatagatggataaattggattatgatgtccatc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26383557 |
ttctgatagatggataaattggattatgatgtgcatc |
26383521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 39530084 - 39530135
Alignment:
| Q |
181 |
gttatgataaaaatgggtttttctgatagatggataaattggattatgatgt |
232 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||||||| ||||||| ||||||| |
|
|
| T |
39530084 |
gttatgattaaaatgggtttctctaatagatggatagattggatcatgatgt |
39530135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 48211202 - 48211307
Alignment:
| Q |
49 |
gataatgctatggcagccatagagatcattcattatatgaagtcgaaagtcaaaggtatattgggagatgttgctcttaagctggatataagtaaagcgt |
148 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||| |||||||| ||||||||||||| ||||||| || ||||||||||| ||||| |||||||| | |
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|
| T |
48211202 |
gataatgttatggctgccattgagatcattcatcatatgaagataaaagtcaaaggtaatgtgggagaagtggctcttaagcttgatattagtaaagctt |
48211301 |
T |
|
| Q |
149 |
atgaca |
154 |
Q |
| |
|
|||||| |
|
|
| T |
48211302 |
atgaca |
48211307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 46390244 - 46390140
Alignment:
| Q |
50 |
ataatgctatggcagccatagagatcattcattatatgaagtcgaaagtcaaaggtatattgggagatgttgctcttaagctggatataagtaaagcgta |
149 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||| |||||||| ||||||||||||| ||||||| || ||||||||||| ||||| |||||||| || |
|
|
| T |
46390244 |
ataatgttatggttgccattgagatcattcatcatatgaagataaaagtcaaaggtaatgtgggagaagtggctcttaagcttgatattagtaaagctta |
46390145 |
T |
|
| Q |
150 |
tgaca |
154 |
Q |
| |
|
||||| |
|
|
| T |
46390144 |
tgaca |
46390140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0354 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 94 - 30
Alignment:
| Q |
1 |
tgcatttctgatagtcaatctgcatttgttgcaggtcgatctgtcctagataatgctatggcagc |
65 |
Q |
| |
|
||||||||||| ||||| ||||||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
94 |
tgcatttctgactgtcaacctgcatttgttccgggtcgatctatcctagataatgctatggcagc |
30 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 11867 - 11762
Alignment:
| Q |
49 |
gataatgctatggcagccatagagatcattcattatatgaagtcgaaagtcaaaggtatattgggagatgttgctcttaagctggatataagtaaagcgt |
148 |
Q |
| |
|
||||||||||||| ||||| ||||||||| || ||||||| ||||||||||||| ||||||| || ||||||||||| ||||| |||||||| | |
|
|
| T |
11867 |
gataatgctatggttgccattgagatcattaatcgtatgaagataaaagtcaaaggtaatgtgggagaagtggctcttaagcttgatattagtaaagctt |
11768 |
T |
|
| Q |
149 |
atgaca |
154 |
Q |
| |
|
|||||| |
|
|
| T |
11767 |
atgaca |
11762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 21702043 - 21702148
Alignment:
| Q |
49 |
gataatgctatggcagccatagagatcattcattatatgaagtcgaaagtcaaaggtatattgggagatgttgctcttaagctggatataagtaaagcgt |
148 |
Q |
| |
|
||||||||||||| ||||| ||||||||| || ||||||| ||||||||||||| ||||||| || ||||||||||| ||||| |||||||| | |
|
|
| T |
21702043 |
gataatgctatggttgccattgagatcattaatcgtatgaagataaaagtcaaaggtaatgtgggagaagtggctcttaagcttgatattagtaaagctt |
21702142 |
T |
|
| Q |
149 |
atgaca |
154 |
Q |
| |
|
|||||| |
|
|
| T |
21702143 |
atgaca |
21702148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 5613214 - 5613176
Alignment:
| Q |
127 |
aagctggatataagtaaagcgtatgacaaaattgattgg |
165 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
5613214 |
aagctggatataagtaaagcgtatgatagaattgattgg |
5613176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 22907829 - 22907946
Alignment:
| Q |
115 |
gatgttgctcttaagctggatataagtaaagcgtatgacaaaattgattggagttatctgaaaagggttatgataaaaatgggtttttctgatagatgga |
214 |
Q |
| |
|
||||||||| | || || ||||| || ||||| ||||||| ||||||||||||||||| | ||||||||| | | ||||| ||||||||| |||| |
|
|
| T |
22907829 |
gatgttgctttaaaacttgatattagcaaagcttatgacaggattgattggagttatcttcgaggggttatgacagagatggggttttctgatcaatggg |
22907928 |
T |
|
| Q |
215 |
taaattggattatgatgt |
232 |
Q |
| |
|
| || ||||||||||||| |
|
|
| T |
22907929 |
ttaaatggattatgatgt |
22907946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 23266720 - 23266603
Alignment:
| Q |
49 |
gataatgctatggcagccatagagatcattcattatatgaagtcgaaagtcaaaggtatattgggagatgttgctcttaagctggatataagtaaagcgt |
148 |
Q |
| |
|
||||||| |||||| || ||||| || || ||| ||||||||||||||||||| | || | ||||| || ||||| || || ||||| || ||||| | |
|
|
| T |
23266720 |
gataatgttatggctgctatagaaataatacatcatatgaagtcgaaagtcaaggataacgttggagaagtggctctgaaacttgatattagcaaagcat |
23266621 |
T |
|
| Q |
149 |
atgacaaaattgattgga |
166 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
23266620 |
atgacaaaattgagtgga |
23266603 |
T |
|
Back To:
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