View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9920_low_33 (Length: 240)

Name: NF9920_low_33
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9920_low_33
NF9920_low_33
[»] chr2 (12 HSPs)
chr2 (1-224)||(34397253-34397476)
chr2 (1-224)||(44789092-44789315)
chr2 (1-224)||(18292141-18292347)
chr2 (75-222)||(28266551-28266697)
chr2 (75-224)||(35670165-35670314)
chr2 (75-224)||(12773831-12773981)
chr2 (78-224)||(40728828-40728972)
chr2 (104-224)||(41339652-41339774)
chr2 (104-224)||(40448169-40448289)
chr2 (112-222)||(23827789-23827899)
chr2 (130-214)||(29271297-29271381)
chr2 (100-220)||(11387628-11387746)
[»] chr3 (13 HSPs)
chr3 (1-224)||(43277440-43277664)
chr3 (3-213)||(17542113-17542323)
chr3 (104-224)||(46403998-46404117)
chr3 (104-224)||(7336090-7336210)
chr3 (96-217)||(8731422-8731544)
chr3 (96-217)||(9083309-9083431)
chr3 (104-224)||(5004127-5004247)
chr3 (78-224)||(11937286-11937429)
chr3 (104-224)||(16976006-16976126)
chr3 (105-224)||(9104786-9104906)
chr3 (125-222)||(5704625-5704722)
chr3 (149-222)||(1461491-1461564)
chr3 (125-222)||(16972614-16972711)
[»] chr4 (8 HSPs)
chr4 (3-224)||(55162780-55163000)
chr4 (3-224)||(28968636-28968857)
chr4 (53-224)||(69939-70108)
chr4 (78-224)||(49499720-49499864)
chr4 (104-224)||(40459639-40459759)
chr4 (75-223)||(2761493-2761638)
chr4 (119-205)||(41869372-41869458)
chr4 (112-222)||(10276745-10276855)
[»] chr7 (16 HSPs)
chr7 (28-224)||(12196152-12196349)
chr7 (3-222)||(49169739-49169958)
chr7 (3-224)||(13163671-13163894)
chr7 (53-224)||(12911129-12911299)
chr7 (75-222)||(48653228-48653369)
chr7 (78-224)||(18366724-18366870)
chr7 (78-224)||(21490886-21491036)
chr7 (53-222)||(40106449-40106618)
chr7 (104-224)||(10288189-10288309)
chr7 (104-224)||(11035781-11035901)
chr7 (100-208)||(24056671-24056781)
chr7 (104-224)||(15873374-15873494)
chr7 (104-224)||(22078315-22078436)
chr7 (125-222)||(9554543-9554640)
chr7 (129-213)||(9994036-9994119)
chr7 (101-201)||(3692022-3692124)
[»] chr8 (8 HSPs)
chr8 (1-224)||(44436688-44436910)
chr8 (4-222)||(22815733-22815942)
chr8 (96-224)||(6150199-6150328)
chr8 (100-224)||(41957857-41957979)
chr8 (104-221)||(35840838-35840955)
chr8 (75-224)||(40840923-40841068)
chr8 (100-222)||(12659338-12659458)
chr8 (166-222)||(10250990-10251046)
[»] chr5 (8 HSPs)
chr5 (1-224)||(40691461-40691684)
chr5 (1-224)||(6309276-6309504)
chr5 (1-174)||(4557452-4557625)
chr5 (1-224)||(30910347-30910567)
chr5 (75-224)||(42862034-42862182)
chr5 (78-224)||(38001643-38001787)
chr5 (104-224)||(537508-537628)
chr5 (177-216)||(23211210-23211249)
[»] chr1 (15 HSPs)
chr1 (10-224)||(8422152-8422365)
chr1 (1-198)||(9536769-9536966)
chr1 (100-222)||(33007051-33007174)
chr1 (75-224)||(18472340-18472488)
chr1 (75-224)||(35761428-35761577)
chr1 (102-219)||(19198203-19198323)
chr1 (104-224)||(6836583-6836703)
chr1 (104-224)||(37666577-37666696)
chr1 (104-224)||(43406765-43406885)
chr1 (104-224)||(338796-338916)
chr1 (79-219)||(16075366-16075506)
chr1 (128-222)||(33009104-33009198)
chr1 (129-222)||(24055667-24055759)
chr1 (117-222)||(24276088-24276192)
chr1 (125-222)||(16111076-16111177)
[»] chr6 (10 HSPs)
chr6 (3-224)||(26182091-26182318)
chr6 (75-224)||(13772807-13772956)
chr6 (75-217)||(24164450-24164592)
chr6 (104-224)||(32449664-32449784)
chr6 (104-224)||(34636875-34636995)
chr6 (105-224)||(23260049-23260168)
chr6 (106-224)||(10751027-10751145)
chr6 (114-222)||(20559494-20559600)
chr6 (119-212)||(31275943-31276036)
chr6 (125-222)||(11166052-11166149)
[»] scaffold1838 (1 HSPs)
scaffold1838 (75-224)||(848-995)
[»] scaffold0657 (1 HSPs)
scaffold0657 (104-224)||(1736-1856)
[»] scaffold0413 (1 HSPs)
scaffold0413 (104-224)||(120-240)
[»] scaffold0013 (1 HSPs)
scaffold0013 (116-219)||(242449-242552)
[»] scaffold0041 (1 HSPs)
scaffold0041 (126-224)||(32743-32840)
[»] scaffold0120 (1 HSPs)
scaffold0120 (125-222)||(2122-2219)
[»] scaffold0002 (1 HSPs)
scaffold0002 (112-222)||(356362-356472)
[»] scaffold0069 (1 HSPs)
scaffold0069 (125-222)||(11407-11504)
[»] scaffold0006 (1 HSPs)
scaffold0006 (125-222)||(89867-89964)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34397476 - 34397253
Alignment:
Q  1 acgcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagca 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  34397476 acgcataattgcattgagtctttttgtatacatgtgattgattattgacttaaaactattttattgcaaataagatgtgtgttaaccttactttgaagca 34397377  T
Q  101 tatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttg 200  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34397376 tatgacttgactgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaatcaatttg 34397277  T
Q  201 gataaggaaattgacccttacact 224  Q
     |||||||||||||||||||||||    
T  34397276 aataaggaaattgacccttacact 34397253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44789092 - 44789315
Alignment:
Q  1 acgcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagca 100  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  44789092 acgcataattgcattgagtttgtt-gtatacatgtgattgattattgacttaaaactattttattgcaaataggatgtgcgtgaaccttactttgaagca 44789190  T
Q  101 tatgacttaaatgtattttc-ttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaattt 199  Q
    |||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||  |||||||||||||||||||||||    
T  44789191 tatgacttgaatgtatttttattaattcttgttgattgataagttttgatattatctattttatgacatagtttcctgtgctttgagtatgaaccaattt 44789290  T
Q  200 ggataaggaaattgacccttacact 224  Q
    ||||||||||||||||||| |||||    
T  44789291 ggataaggaaattgaccctcacact 44789315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 18292347 - 18292141
Alignment:
Q  1 acgcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagca 100  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||                  |||||||||    
T  18292347 acgcataattgtattgagtctgtt-gtatacatgtgattgattattgacttaaaactattttattgcaaataat-----------------tttgaagca 18292266  T
Q  101 tatgacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaattt 199  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18292265 tatgacttgaatgtatttttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgaggatgaaccaattt 18292166  T
Q  200 ggataaggaaattgacccttacact 224  Q
    |||||||||||||||||||||||||    
T  18292165 ggataaggaaattgacccttacact 18292141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 28266697 - 28266551
Alignment:
Q  75 atgtgtgtgaaccttactttgaagcatatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttc 174  Q
    |||||||||||| ||||||  ||| ||||||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||||| |||||||||||||    
T  28266697 atgtgtgtgaactttactta-aagaatatgacttgaatgtattttcttaattctttttgattgagaagtgttgatattgtctattttatgacattgtttc 28266599  T
Q  175 tggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266598 tggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 28266551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 35670314 - 35670165
Alignment:
Q  75 atgtgtgtgaaccttactttgaagcatatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttc 174  Q
    |||||| ||||| ||||||  || |||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  35670314 atgtgtatgaactttacttaaaaacatatgacttgaatgtattttcttaaatctttttgattgagaagttttgatactatctattttatgacattgtttc 35670215  T
Q  175 tggtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||||    
T  35670214 ttgtgctttgagtaggaaccaatttggataaggaaattgacccttacact 35670165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 12773981 - 12773831
Alignment:
Q  75 atgtgtgtgaaccttactttgaagcatatgacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgttt 173  Q
    |||||||||||| |||| || ||| |||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||||| | ||||||||||||    
T  12773981 atgtgtgtgaactttaccttaaagaatatgacttaaatgtatttttcttaattctttttgattgagaagttttggtactatctatcttatgacattgttt 12773882  T
Q  174 ctggtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    || |||||||||||||||||||||||||||||| |||||||| ||||||||    
T  12773881 cttgtgctttgagtatgaaccaatttggataagaaaattgacacttacact 12773831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 40728972 - 40728828
Alignment:
Q  78 tgtgtgaaccttactttgaagcatatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctgg 177  Q
    ||||||||| ||||||  ||| ||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||||||| |||    
T  40728972 tgtgtgaactttactta-aagaatatgacttgaatgtattttcttaaatctttttgattgagaagttttgatactatctattttatgacattgttt-tgg 40728875  T
Q  178 tgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  40728874 tgctttgagtatgaaccaatttgaataaggaaattgacccttacact 40728828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 41339774 - 41339652
Alignment:
Q  104 gacttaaatgtattttc-ttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgcttt-gagtatgaaccaatttgg 201  Q
    ||||||||||||||||  ||| |||||||| |||||||||||||||||||||||| || ||||| |||||| ||||||||| ||||||||||||||||||    
T  41339774 gacttaaatgtatttttattatttcttttttattgataagttttgatattatctactttatgactttgtttatggtgcttttgagtatgaaccaatttgg 41339675  T
Q  202 ataaggaaattgacccttacact 224  Q
    |||||||||||||||||||||||    
T  41339674 ataaggaaattgacccttacact 41339652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 40448169 - 40448289
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || ||||||||||||||||||||||||||    
T  40448169 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaaccaatttgga 40448267  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||| ||||    
T  40448268 taaggaaattgacccttgcact 40448289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 23827899 - 23827789
Alignment:
Q  112 tgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaat 211  Q
    ||||| || ||| ||||||||||| || ||| ||| ||| ||||||||| |   |||||||||| |||||||||||||||||||||||||||||||||||    
T  23827899 tgtatatttttatttctttttgatcgagaagattttatactatctattttagagcattgtttcttgtgctttgagtatgaaccaatttggataaggaaat 23827800  T
Q  212 tgacccttaca 222  Q
    | |||||||||    
T  23827799 taacccttaca 23827789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 29271297 - 29271381
Alignment:
Q  130 tttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattga 214  Q
    ||||||||| || |||||||||||||||||| | |||| ||||||| ||||||| |||||||||||||||||| |||||||||||    
T  29271297 tttgattgagaatttttgatattatctattttacgacactgtttcttgtgcttttagtatgaaccaatttggacaaggaaattga 29271381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 11387628 - 11387746
Alignment:
Q  100 atatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaattt 199  Q
    ||||| ||| ||||||||||  || ||||||||||| || ||| ||| ||||||||||||| |  | ||||||| | |||||||||||||||||||||||    
T  11387628 atatggcttgaatgtatttt--tatttctttttgatcgagaagattttatattatctattttagaatattgtttattgtgctttgagtatgaaccaattt 11387725  T
Q  200 ggataaggaaattgaccctta 220  Q
    ||||||| ||||| |||||||    
T  11387726 ggataagaaaattaaccctta 11387746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 43277664 - 43277440
Alignment:
Q  1 acgcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagca 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  43277664 acgcataattgcattgagtctgtt-gtatacatgtgattgattattgacttaaaactattttattgcaaataagatgtgtgtgaaccttactttgaagaa 43277566  T
Q  101 tatgacttaaatgtatttt--cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatt 198  Q
    |||||||| ||||||||||  ||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||    
T  43277565 tatgacttgaatgtattttttcttaatttttttttattgataagttttgatactatctattttatgacattgtttatggtgctttgagtatgaaccaatt 43277466  T
Q  199 tggataaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||||||    
T  43277465 tggataaggaaattgacccttacact 43277440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 17542323 - 17542113
Alignment:
Q  3 gcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagcata 102  Q
    |||||| ||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||| || |||||||||||||||||||||||     
T  17542323 gcataactgcattgagtctgtt-gtatacatgtgattgatgattgacataaaactattttattgcaaataagttgggtgtgaaccttactttgaagcatg 17542225  T
Q  103 tgacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgg 201  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||    
T  17542224 tgacttgaatgtatttttcttaattctttttgattggtaagttttgatattatctattttatgacattgtttatggtgctttgagtatgaactaatttgg 17542125  T
Q  202 ataaggaaattg 213  Q
    ||||||||||||    
T  17542124 ataaggaaattg 17542113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 46404117 - 46403998
Alignment:
Q  104 gacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggat 203  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||| ||||||| || |||||||||||||||||||||||||||    
T  46404117 gacttaaatgtattttcttatttctttttgattgagaagttttgatactatctattttatggcattgtt-cttgtgctttgagtatgaaccaatttggat 46404019  T
Q  204 aaggaaattgacccttacact 224  Q
    |||||||||||||||||||||    
T  46404018 aaggaaattgacccttacact 46403998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 7336210 - 7336090
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || ||||||||||||||||||||||||||    
T  7336210 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaaccaatttgga 7336112  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||    
T  7336111 taaggaaattgacccttacact 7336090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 8731422 - 8731544
Alignment:
Q  96 aagcatatgacttaaatgtattttcttaatt-ctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaacc 194  Q
    ||||| || |||| ||||||||||  ||||| ||||||||||||||||| |||||| ||||||||| ||| |||||||||| ||||||||||||||||||    
T  8731422 aagcacataacttcaatgtatttttctaatttctttttgattgataagtcttgatactatctattttatggcattgtttcttgtgctttgagtatgaacc 8731521  T
Q  195 aatttggataaggaaattgaccc 217  Q
    |||||||||||||||||||||||    
T  8731522 aatttggataaggaaattgaccc 8731544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 9083309 - 9083431
Alignment:
Q  96 aagcatatgacttaaatgtattttcttaatt-ctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaacc 194  Q
    ||||| || |||| ||||||||||  ||||| ||||||||||||||||| |||||| ||||||||| ||| |||||||||| ||||||||||||||||||    
T  9083309 aagcacataacttcaatgtatttttctaatttctttttgattgataagtcttgatactatctattttatggcattgtttcttgtgctttgagtatgaacc 9083408  T
Q  195 aatttggataaggaaattgaccc 217  Q
    |||||||||||||||||||||||    
T  9083409 aatttggataaggaaattgaccc 9083431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 5004247 - 5004127
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  ||  |||||| || ||||||||||||||||||||||||||    
T  5004247 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggtattgtt-cttgtgctttgagtatgaaccaatttgga 5004149  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||    
T  5004148 taaggaaattgacccttacact 5004127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 11937429 - 11937286
Alignment:
Q  78 tgtgtgaaccttactttgaagcatatgacttaaatgtattttc-ttaattctttttgattgataagttttgatattatctatttcatgacattgtttctg 176  Q
    ||||||||||||| ||| |||||||| |||| ||||||||||| ||| |||||||| ||||| ||||||||||| |||   ||| ||||||||||||||     
T  11937429 tgtgtgaacctta-tttaaagcatataacttgaatgtattttccttatttctttttaattgagaagttttgatactat---ttttatgacattgtttctt 11937334  T
Q  177 gtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||    
T  11937333 atgctttgaatatgaaccaatttggataaggaaattgacccttacact 11937286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 16976006 - 16976126
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || ||| ||||||||||||||||||||||    
T  16976006 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgttttgagtatgaaccaatttgga 16976104  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||    
T  16976105 taaggaaattgacccttacact 16976126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 9104786 - 9104906
Alignment:
Q  105 acttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggat 203  Q
    ||||||||||||||| |||| |||||||||||||| |||||| |||| ||| ||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  9104786 acttaaatgtatttttcttatttctttttgattgagaagtttcgatactatttattttatggcattgtttcttgtgctttgagtatgaaccaatttggat 9104885  T
Q  204 aaggaaattgacccttacact 224  Q
    ||||||||||| |||| ||||    
T  9104886 aaggaaattgatccttgcact 9104906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 5704625 - 5704722
Alignment:
Q  125 ttctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    ||||||||||| || ||| ||| ||| ||||||||| |   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5704625 ttctttttgatcgagaagattttatactatctattttagagcattgtttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttaca 5704722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 1461491 - 1461564
Alignment:
Q  149 tattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    |||||||||||| | | |||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  1461491 tattatctattttagggcattgtttcttgtgctttgagtatgaactaatttggataaggaaattgactcttaca 1461564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 16972614 - 16972711
Alignment:
Q  125 ttctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    ||||||||||| || ||| ||| ||| ||||||||| |   |||||||||| ||||||||||||||||  |||| | ||||| |||||||| ||||||    
T  16972614 ttctttttgatggaaaagattttatactatctattttagagcattgtttcttgtgctttgagtatgaagtaattagaataagtaaattgactcttaca 16972711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 55162780 - 55163000
Alignment:
Q  3 gcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagcata 102  Q
    |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||     
T  55162780 gcataattgcattgagtctgtt-gtgtacatgtgattgatgattgacttaaaactattttat-gcaaacaagatgtgtgtgaaccttactttgaagcatg 55162877  T
Q  103 tgacttaaatgta-ttttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgg 201  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55162878 tgacttgaatgtaattttcttaattctttttgattgataagttttgatattatctattttatgacattgtttctggtgctttgagtatgaaccaatttgg 55162977  T
Q  202 ataaggaaattgacccttacact 224  Q
    |||||||||||||||||||||||    
T  55162978 ataaggaaattgacccttacact 55163000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 28968857 - 28968636
Alignment:
Q  3 gcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagcata 102  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  28968857 gcataattgcattgagtctgtt-gtatacatgtgattgatgattgacttaaaactattttattgcaaataagatgtgtgtgaaccttactttgaagcatg 28968759  T
Q  103 tgacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgg 201  Q
    |||||| |||||||||| |||||||| |||| |||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||| |||||||||||    
T  28968758 tgacttgaatgtatttttcttaattcgtttttattggtaagttttgatattatctattttatgagattgtttcttgtgctttgagtatcaaccaatttgg 28968659  T
Q  202 ataaggaaattgacccttacact 224  Q
    |||||||||||||||||||||||    
T  28968658 ataaggaaattgacccttacact 28968636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 53 - 224
Target Start/End: Original strand, 69939 - 70108
Alignment:
Q  53 aaactattttattgtaaataagatgtgtgtgaaccttactttgaagcatatgacttaaatgtattttcttaattctttttgattgataagttttgatatt 152  Q
    |||||||||||||| |||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||| || |||||||||| |||||||||||||    
T  69939 aaactattttattgcaaataagatgtgcgtgaaccttacttcgaagcatatgacttgaatgtattttcttaaatc-ttttgattgagaagttttgatatt 70037  T
Q  153 atctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  70038 atctattttatgacatagtttctggtgc-ttgagtatgaaccaatttggataaggaaattgatccttacact 70108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 49499720 - 49499864
Alignment:
Q  78 tgtgtgaaccttactttgaagcatatgacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctg 176  Q
    |||||||||||||  || |||||||| |||| |||||||||| |||| |||||||| ||||| |||||||||||| |||||||| |||||||||||||||    
T  49499720 tgtgtgaacctta--ttaaagcatataacttgaatgtatttttcttatttctttttaattgagaagttttgatatgatctattttatgacattgtttctg 49499817  T
Q  177 gtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||    
T  49499818 gtgc-ttgagtatgaactaatttggataaggaaattgacccttacact 49499864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 40459639 - 40459759
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || ||||||||||||||||||||||||||    
T  40459639 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaaccaatttgga 40459737  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||| ||||    
T  40459738 taaggaaattgacccttgcact 40459759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 2761638 - 2761493
Alignment:
Q  75 atgtgtgtgaaccttactttgaagcatatgacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgttt 173  Q
    |||||| ||||| ||||||  |||||||||| || |||||||||| |||| |||||||||||||| |||||| |||| ||||||||| ||| |||| ||     
T  2761638 atgtgtatgaactttacttaaaagcatatgatttgaatgtatttttcttatttctttttgattgagaagtttagatactatctattttatggcattctt- 2761540  T
Q  174 ctggtgctttgagtatgaaccaatttggataaggaaattgacccttacac 223  Q
       |||||||||||||||||||||||||||||||||||||||||||||||    
T  2761539 ---gtgctttgagtatgaaccaatttggataaggaaattgacccttacac 2761493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 41869372 - 41869458
Alignment:
Q  119 tcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataa 205  Q
    ||||| |||||||||||||| |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| |||||||||||    
T  41869372 tcttatttctttttgattgagaagttttgatattatctatttcgtgacattatttcttgtgctttgagtatgaactaatttggataa 41869458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 10276745 - 10276855
Alignment:
Q  112 tgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaat 211  Q
    ||||| || ||| ||||||||||| || ||| ||| ||| ||||||||| |   |||||||||| |||||||||||||||||||||||| ||||||||||    
T  10276745 tgtatatttttatttctttttgatcgagaagattttatactatctattttagagcattgtttcttgtgctttgagtatgaaccaatttgtataaggaaat 10276844  T
Q  212 tgacccttaca 222  Q
    |||||||||||    
T  10276845 tgacccttaca 10276855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 12196349 - 12196152
Alignment:
Q  28 atacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagcatatgacttaaatgtatttt-cttaatt 126  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  12196349 atacatgtgattgattattgacttaaaactattttattgcaaataagatgtgtgtgaaccttactttgaagcatatgacttgaatgtatttttcttaatt 12196250  T
Q  127 ctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12196249 ctttttgattgataagttttgctattatctatttcatgacattgtttatggtgctttgagtatgaaccaatttggataaggaaattgactcttacact 12196152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 49169958 - 49169739
Alignment:
Q  3 gcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagcata 102  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||     
T  49169958 gcataattgcattgagtgtgtt-gtatacatgtgattgatgattgacttaaaactattttattgcaaacaagatgtgtgtgaaccttactttgaagcatg 49169860  T
Q  103 tgacttaaatgta-ttttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgg 201  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49169859 tgacttgaatgtaattttcttaattctttttgattgataagttttgatattatctattttatgacattgtttctggtgctttgagtatgaaccaatttgg 49169760  T
Q  202 ataaggaaattgacccttaca 222  Q
    ||||| |||||||||| ||||    
T  49169759 ataagaaaattgacccctaca 49169739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 13163894 - 13163671
Alignment:
Q  3 gcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtg--aaccttactttgaagca 100  Q
    |||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||    
T  13163894 gcataattgctttgaatctgtt-gtatacatgtgattgatgattgacttaaaactattttattgcaaacaagatgtgtgtgtgaaccttactttgaagca 13163796  T
Q  101 tatgacttaaatgta-ttttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaattt 199  Q
    | |||||| || ||| ||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  13163795 tgtgacttgaaagtaattttcttaattcttttttattgataagttttgatattatctaatttatgacattgtttctggtgctttgagtatgaaccaattt 13163696  T
Q  200 ggataaggaaattgacccttacact 224  Q
    || ||||||||||||||||||||||    
T  13163695 ggttaaggaaattgacccttacact 13163671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 53 - 224
Target Start/End: Complemental strand, 12911299 - 12911129
Alignment:
Q  53 aaactattttattgtaaataagatgtgtgtgaaccttactttgaagcatatgacttaaatgtattttcttaattctttttgattgataagttttgatatt 152  Q
    |||||||| || || |||| | || |||| |||||||||||  ||| ||||||||| |||||||||||||||  |||||||||||| ||||||||||| |    
T  12911299 aaactattataatgcaaatgaaatatgtgcgaaccttactta-aaggatatgacttgaatgtattttcttaaacctttttgattgagaagttttgatact 12911201  T
Q  153 atctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  12911200 atctattttatgacattgtttcttgtgctttgagtatgaaccaatttggataagaaaattgacccttacact 12911129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 48653369 - 48653228
Alignment:
Q  75 atgtgtgtgaaccttactttgaagcatatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttc 174  Q
    |||||| ||||| ||||||  || |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||      |||||||||    
T  48653369 atgtgtatgaactttacttaaaaacatatgacttgaatgtattttcttaaatctttttgattgagaagttttgatattatctatt------cattgtttc 48653276  T
Q  175 tggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||    
T  48653275 ttgtgctttgagtatgaaccaatttggataaggaaattgacccttaca 48653228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 18366870 - 18366724
Alignment:
Q  78 tgtgtgaaccttactttgaagcatatgacttaaatgtattttc-ttaattctttttgattgataagttttgatattatctatttcatgacattgtttctg 176  Q
    |||||||| |||| ||| |||||||| |||| ||||||||||| ||| |||||||| ||||| ||||||||||| ||||||||| ||||||||||||||     
T  18366870 tgtgtgaagctta-tttaaagcatataacttgaatgtattttccttatttctttttaattgagaagttttgatactatctattttatgacattgtttctt 18366772  T
Q  177 gtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  18366771 gtgctttgggtatgaaccaatttggataaggaaattgacccttacact 18366724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 21491036 - 21490886
Alignment:
Q  78 tgtgtgaaccttactttgaagcatatgacttaaatgtattttc-ttaattctttttgattgataagttttgatat----tatctatttcatgacattgtt 172  Q
    ||||||||||||| ||| |||||||| |||| ||||||||||| ||| |||||||| ||||| ||||||||||||    ||||||||| |||||||||||    
T  21491036 tgtgtgaacctta-tttaaagcatataacttgaatgtattttccttatttctttttaattgagaagttttgatatatactatctattttatgacattgtt 21490938  T
Q  173 tctggtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21490937 tcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacact 21490886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 40106449 - 40106618
Alignment:
Q  53 aaactattttattgtaaataagatgtgtgtgaaccttactttgaagcatatgacttaaatgtatttt-cttaattctttttgattgataagttttgatat 151  Q
    |||||||| || || |||| | |||||||||||| ||||||  |  || ||||||| |||||||||| ||||  ||||||||||||| |||||||||||     
T  40106449 aaactattataatgcaaatgaaatgtgtgtgaactttacttaaagaca-atgacttgaatgtatttttcttatatctttttgattgagaagttttgatac 40106547  T
Q  152 tatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  40106548 tatctattttatgacattgtttcttgtgctttgagtatgaaccaatttggatatggaaattgacccttaca 40106618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 10288309 - 10288189
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || ||||||||||||||||||||||||||    
T  10288309 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaaccaatttgga 10288211  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||    
T  10288210 taaggaaattgacccttacact 10288189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 11035901 - 11035781
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || ||||||||||||||||||||||||||    
T  11035901 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaaccaatttgga 11035803  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||    
T  11035802 taaggaaattgacccttacact 11035781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 24056781 - 24056671
Alignment:
Q  100 atatgactta-aatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaat 197  Q
    |||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||    
T  24056781 atatgacttagaatgtatttttcttatttctttttgattgagaagttttgatattatctattttatgacattgtttctagtgctttgagtatgaatcaat 24056682  T
Q  198 ttggataagga 208  Q
    |||||||||||    
T  24056681 ttggataagga 24056671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 15873494 - 15873374
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || ||||||||||||||||||||||||||    
T  15873494 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaaccaatttgga 15873396  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||| ||||    
T  15873395 taaggaaattgacccttgcact 15873374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 22078315 - 22078436
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagt-atgaaccaatttgg 201  Q
    |||||||||||||||| |||| |||||| ||||||| ||||||||||| |||||||||  || ||||||| || || |||||||| ||||||||||||||    
T  22078315 gacttaaatgtatttttcttatttctttctgattgagaagttttgatactatctattttgtggcattgtt-cttgtactttgagttatgaaccaatttgg 22078413  T
Q  202 ataaggaaattgacccttacact 224  Q
    |||||||||||||||||||||||    
T  22078414 ataaggaaattgacccttacact 22078436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 9554640 - 9554543
Alignment:
Q  125 ttctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    |||||||||||| | ||||||||||| |||||| || || ||||||||||| ||||||||||||||||||| ||| |||||| |||||||||||||||    
T  9554640 ttctttttgattaagaagttttgatactatctactttataacattgtttcttgtgctttgagtatgaaccagtttagataagaaaattgacccttaca 9554543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 9994036 - 9994119
Alignment:
Q  129 ttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattg 213  Q
    |||| ||||| ||||||||||| |||||||||  || ||||||| || |||||||||||||||||||||||||||||||||||||    
T  9994036 tttttattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaaccaatttggataaggaaattg 9994119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 3692022 - 3692124
Alignment:
Q  101 tatgacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcat-gacattgtttctggtgctttgagtatgaaccaatt 198  Q
    |||||||| |||||||||| |||| |||||||||||||| |||||||||||  ||||||||  | |  ||| ||||| ||||||||||||||||||||||    
T  3692022 tatgacttgaatgtatttttcttatttctttttgattgagaagttttgataccatctatttttttggaattttttcttgtgctttgagtatgaaccaatt 3692121  T
Q  199 tgg 201  Q
    |||    
T  3692122 tgg 3692124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44436688 - 44436910
Alignment:
Q  1 acgcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagca 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  44436688 acgcataattgcattgagtctgtt-gtatacatgtgattgattattaacttagaactattttattgcaaataagatgtgtgtgaaccttactttggagca 44436786  T
Q  101 tatgacttaaatgta-ttttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaattt 199  Q
    |||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  44436787 tatgacttgaatgtattttttttaattctttttgattgataagttttgatattatctattt-atgacattgtttctggtgctttgagtatgaatcaattt 44436885  T
Q  200 ggataaggaaattgacccttacact 224  Q
    |||||||||||| ||||||||||||    
T  44436886 ggataaggaaatcgacccttacact 44436910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 22815942 - 22815733
Alignment:
Q  4 cataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagcatat 103  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  22815942 cataattgcattgagtctgtt-gtatacatgtgattgattattgacttaaaactattttattgcaaataagatgtgcgtgaaccttactttgaagcatat 22815844  T
Q  104 gacttaaatgta-ttttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    ||||| |||||| |||| ||||||||| ||||         ||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||    
T  22815843 gacttcaatgtatttttattaattcttgttga---------tttgatattatctattttatgatatagtttctggtgctttgagtatgaaccaatttgga 22815753  T
Q  203 taaggaaattgacccttaca 222  Q
    ||| ||||||||||||||||    
T  22815752 taatgaaattgacccttaca 22815733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 6150199 - 6150328
Alignment:
Q  96 aagcatatgacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaacc 194  Q
    |||||| ||| || |||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  6150199 aagcatgtgatttgaatgtatttttcttaattctttttgattggtaagttttgatattatctattttatgacattgtttctggtgttttgagtatgaacc 6150298  T
Q  195 aatttggataaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||||||||||    
T  6150299 aatttggataaggaaattgacccttacact 6150328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 41957979 - 41957857
Alignment:
Q  100 atatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaattt 199  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  41957979 atatgacttgaatgtattttcttaaatctttttgattgagaagttttgatactatctattttatgacattgtttct--tgctttgagtatgaaccaattt 41957882  T
Q  200 ggataaggaaattgacccttacact 224  Q
    |||||||||||||||||||||||||    
T  41957881 ggataaggaaattgacccttacact 41957857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 35840838 - 35840955
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| | || |||||||| ||||| ||||||||||| |||||||||  || ||||||| || ||||||||||||||||||||||||||    
T  35840838 gacttaaatgtatttttcctatttctttttaattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaaccaatttgga 35840936  T
Q  203 taaggaaattgacccttac 221  Q
    |||||||||||||||||||    
T  35840937 taaggaaattgacccttac 35840955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 40841068 - 40840923
Alignment:
Q  75 atgtgtgtgaaccttactttgaagcatatgacttaaatgta-ttttcttaattctttttgattgataagttttgatattatctatttcatgacattgttt 173  Q
    |||||||||||| |||  || ||| |||||| || |||||| |||||||||||||||||| |||| |||||||| || ||||||| |     ||||||||    
T  40841068 atgtgtgtgaactttaacttaaagaatatgaattgaatgtaattttcttaattctttttgtttgagaagttttggtactatctatct-----cattgttt 40840974  T
Q  174 ctggtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    || ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40840973 cttgtgctttgagtatgaactaatttggataaggaaattgacccttacact 40840923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 12659458 - 12659338
Alignment:
Q  100 atatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaattt 199  Q
    ||||||||| | ||||||||  || ||||||||||| || ||| ||| ||| ||||||||| |   |||||||||| |||||||||||||||||||||||    
T  12659458 atatgacttgagtgtatttt--tatttctttttgatcgagaagattttatactatctattttagagcattgtttcttgtgctttgagtatgaaccaattt 12659361  T
Q  200 ggataaggaaattgacccttaca 222  Q
    |||||||||||||||||||||||    
T  12659360 ggataaggaaattgacccttaca 12659338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 10250990 - 10251046
Alignment:
Q  166 cattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  10250990 cattgtttcttgtgcttttagtatgaaccaatttggataaggaaattgactcttaca 10251046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40691461 - 40691684
Alignment:
Q  1 acgcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagca 100  Q
    |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||    
T  40691461 acgcataattgcattgagtctgtt-gtatacatgtggttgatgattgacttaaatctattttattgcaaatgagatgtgtgtgaaccttaccttgaagca 40691559  T
Q  101 tatgacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaattt 199  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  40691560 tatgacttgaatgtatttttcttaattctttttgattgataagttttaatattatctattttatgatattgtttctggtgctttgagtatgaaccaattt 40691659  T
Q  200 ggataaggaaattgacccttacact 224  Q
    |||||||||||||||||||||||||    
T  40691660 ggataaggaaattgacccttacact 40691684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6309276 - 6309504
Alignment:
Q  1 acgcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttacttt-----g 95  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     |    
T  6309276 acgcataagtgcattgagtctgtt-gtatatatgtgattgattatggacttaaaactattttattgtaaataagatgtgtgtgaaccttactttaatttg 6309374  T
Q  96 aagcatatgacttaaatgtattttc-ttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaacc 194  Q
    ||||| ||||||| || |||||||  ||||||||| ||||||||||||||||||||||||||| |  ||||||| |||||||||||||||||||||||||    
T  6309375 aagcacatgacttgaaggtatttttattaattcttgttgattgataagttttgatattatctaatatatgacatagtttctggtgctttgagtatgaacc 6309474  T
Q  195 aatttggataaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||||||||||    
T  6309475 aatttggataaggaaattgacccttacact 6309504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 4557625 - 4557452
Alignment:
Q  1 acgcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagca 100  Q
    ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  4557625 acgcataattgcattgagtttgtt-gtatacatgtgattgatgattgacttaaaactattttattgcaaataagatgtgtgtggaccttactttgaagca 4557527  T
Q  101 tatgacttaaatgta-ttttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttc 174  Q
    | |||||| |||| | |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||    
T  4557526 tgtgacttgaatgcatttttcttaattctttttgataggtaagttttgatattatctattttatgacattgtttc 4557452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30910347 - 30910567
Alignment:
Q  1 acgcataattgcattgagtctgtttgtatacatgtgattg-attattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagc 99  Q
    |||||||||||||||||||| ||| |||||  |||||||  || ||||| |  |||||||| || ||||||| | || || |||||| ||||||  |||     
T  30910347 acgcataattgcattgagtcggtt-gtatatttgtgattttataattgatt--aaactattataatgtaaatgaaatatgcgtgaactttactta-aaga 30910442  T
Q  100 atatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaattt 199  Q
    ||||||||| |||||| |||| ||| ||||||||||||| |||||||||||||||||| || |||||||||||| ||||| |||||||||||||||||||    
T  30910443 atatgacttgaatgtaatttcataaatctttttgattgagaagttttgatattatctactttatgacattgtttatggtgttttgagtatgaaccaattt 30910542  T
Q  200 ggataaggaaattgacccttacact 224  Q
    |||||||||||||||||||||||||    
T  30910543 ggataaggaaattgacccttacact 30910567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 42862034 - 42862182
Alignment:
Q  75 atgtgtgtgaaccttactttgaagcatatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttc 174  Q
    |||||| ||||| ||||||  || |||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||     
T  42862034 atgtgtatgaactttacttaaaaacatatgacttaaatgtattttcttaaatctttttgattgagaagttttgatactatctattttatgacattgttt- 42862132  T
Q  175 tggtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||||||||    
T  42862133 tggtgctttgagtataaactaatttggataagaaaattgacccttacact 42862182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 38001643 - 38001787
Alignment:
Q  78 tgtgtgaaccttactttgaagcatatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctgg 177  Q
    ||||||||| ||||||| ||| ||||||||| |||||||||| | || ||||||||||||| ||||||||||| ||||||||| |||||||||||| |||    
T  38001643 tgtgtgaactttacttt-aagaatatgacttgaatgtattttttaaaatctttttgattgagaagttttgatactatctattttatgacattgttt-tgg 38001740  T
Q  178 tgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    || |||| |||||||||||||||||||||||||||| | ||||||||    
T  38001741 tgttttgtgtatgaaccaatttggataaggaaattggctcttacact 38001787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 537508 - 537628
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || |||||||| |||||||||||||||||    
T  537508 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgggtatgaaccaatttgga 537606  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||    
T  537607 taaggaaattgacccttacact 537628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 23211210 - 23211249
Alignment:
Q  177 gtgctttgagtatgaaccaatttggataaggaaattgacc 216  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23211210 gtgctttgagtatgaaccaatttggataaggaaattgacc 23211249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 8422152 - 8422365
Alignment:
Q  10 tgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagcatatgactta 109  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||| |||||||    
T  8422152 tgcattgagtctgtt-gtatacatgtgattgataattgacttaaaactattttattgcaaacaagatgtgtatgaactttactttgaagcatgtgactta 8422250  T
Q  110 aatgta-ttttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataagga 208  Q
      |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8422251 g-tgtaattttcttaattctttttgattgataagttttgatattatctattttatgacattgtttctggtgctttgagtatgaaccaatttggataagga 8422349  T
Q  209 aattgacccttacact 224  Q
    ||||||||||||||||    
T  8422350 aattgacccttacact 8422365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 9536966 - 9536769
Alignment:
Q  1 acgcataattgcattgagtctgtttgtatacatgtgattgattattgacttaaaactattttattgtaaataagatgtgtgtgaaccttactttgaagca 100  Q
    ||||||||||| ||||||||| || ||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  9536966 acgcataattgtattgagtctctt-gtgcacatgtgattgattattgacttaaaactattttattgcaaataagatgtgtgtgaaccttaccttgaagca 9536868  T
Q  101 tatgacttaaatgta-ttttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatt 198  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  9536867 tatgacttgaatgtatttttcttaattctttttgattgataagttttgatattatctattttatgacattgtttctagtgctttgagtatgaaccaatt 9536769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 33007174 - 33007051
Alignment:
Q  100 atatgacttaaatgta-ttttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatt 198  Q
    |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  33007174 atatgacttaaatgtacttttcttatttctttttgattgagaagttttgatattatctattttatgacattgtttctggtgctttgagtatgaatcaatt 33007075  T
Q  199 tggataaggaaattgacccttaca 222  Q
    ||||||||||||||||||||||||    
T  33007074 tggataaggaaattgacccttaca 33007051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 18472488 - 18472340
Alignment:
Q  75 atgtgtgtgaaccttactttgaagcatatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttc 174  Q
    |||||| ||||| ||||||  || |||||||||| |||||||||||| || ||||||||||||| ||||||||||| ||||||||| ||||||||||||     
T  18472488 atgtgtatgaactttacttaaaaacatatgacttgaatgtattttctaaaatctttttgattgagaagttttgatactatctattttatgacattgttt- 18472390  T
Q  175 tggtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18472389 tggtgctttgagtatgaaccaatttggataagaaaattgacccttacact 18472340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 35761577 - 35761428
Alignment:
Q  75 atgtgtgtgaaccttactttgaagcatatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttc 174  Q
    |||||| |||||  |||||  ||||||||||||| |||||||||| |||| ||||||||||| | |||||||||||| |||||||| ||| ||| |||||    
T  35761577 atgtgtatgaactctacttaaaagcatatgacttgaatgtatttttttaaatctttttgattcagaagttttgatatcatctattttatggcatggtttc 35761478  T
Q  175 tggtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35761477 ttgtgctttgagtatgaaccaatttggataaggaaattgacccttacact 35761428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 19198323 - 19198203
Alignment:
Q  102 atgacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgttt--ctggtgctttgagtatgaaccaatt 198  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||  || ||||||||||||||||||||||    
T  19198323 atgacttaaatgtatttttcttaattctttttaattgagaagttttgatactatctattttatgacattgtttatcttgtgctttgagtatgaaccaatt 19198224  T
Q  199 tggataaggaaattgaccctt 219  Q
    |||||||||||||||||||||    
T  19198223 tggataaggaaattgaccctt 19198203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 6836583 - 6836703
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || ||||||| ||||||||||||||||||    
T  6836583 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttaagtatgaaccaatttgga 6836681  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||    
T  6836682 taaggaaattgacccttacact 6836703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 37666696 - 37666577
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||||||||||| |||||| ||||||||||| |||||||||  || ||||||| || ||||||||||||||||||||||||||    
T  37666696 gacttaaatgtatttttcttaattctttt-gattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaaccaatttgga 37666599  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||    
T  37666598 taaggaaattgacccttacact 37666577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 43406885 - 43406765
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || ||||||||||||||||||||||||||    
T  43406885 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaaccaatttgga 43406787  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||| ||||    
T  43406786 taaggaaattgacccttgcact 43406765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 338796 - 338916
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||  |||||||||||||| ||||||||||| |||||||||  || ||||||| || ||||||||||||||||||||||||||    
T  338796 gacttaaatgtatttttcttgtttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaaccaatttgga 338894  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||| ||||    
T  338895 taaggaaattgacccttgcact 338916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 16075366 - 16075506
Alignment:
Q  79 gtgtgaaccttactttgaagcatatgacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctgg 177  Q
    |||||||| ||||||  ||| ||||||||| | |||||||| ||||||||||||| ||| | |||||||||||| |||||||| || |||||||||||      
T  16075366 gtgtgaactttactta-aagaatatgacttgagtgtatttttcttaattcttttttattaagaagttttgatatcatctattttataacattgtttcttc 16075464  T
Q  178 tgctttgagtatgaaccaatttggataaggaaattgaccctt 219  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  16075465 tgctttgagtatgaaccaacttggataaggaaattgagcctt 16075506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 33009104 - 33009198
Alignment:
Q  128 tttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    |||||||| ||  ||||| |||| |||||| || |||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||    
T  33009104 tttttgatcgagtagtttcgatactatctactttatgacattgtttcttgtgctttgagcatgaaccaatttggataagaaaattgacccttaca 33009198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 24055759 - 24055667
Alignment:
Q  129 ttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    ||||||| || |||||||||| ||||||| ||  || ||||||| || ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  24055759 ttttgatcgagaagttttgatgttatctactttgtggcattgtt-cttgtgctttgagtatcaaccaatttggataaggaaattgacccctaca 24055667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 24276088 - 24276192
Alignment:
Q  117 tttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacc 216  Q
    ||||||| ||| ||||||| || ||||||||||  |||||| ||  || ||||||| || || |||||||||||||||||||||||||| ||||||||||    
T  24276088 tttcttatttccttttgatcgagaagttttgatgctatctactttgtggcattgtt-cttgtactttgagtatgaaccaatttggataaagaaattgacc 24276186  T
Q  217 cttaca 222  Q
    ||||||    
T  24276187 cttaca 24276192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 16111076 - 16111177
Alignment:
Q  125 ttctttttgattgataagttttgatattatctatttcatgacattgttt----ctggtgctttgagtatgaaccaatttggataaggaaattgaccctta 220  Q
    ||||||||||| || ||||||| ||| | ||||||| | ||||||||||    || || ||||||||||||||||||||||||||| |||||||||||||    
T  16111076 ttctttttgatcgaaaagtttttatactgtctattttaagacattgtttatttcttgtcctttgagtatgaaccaatttggataagaaaattgaccctta 16111175  T
Q  221 ca 222  Q
    ||    
T  16111176 ca 16111177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 26182318 - 26182091
Alignment:
Q  3 gcataattgcattgagtctgtttgtatacatgtgattgattattga-------cttaaaactattttattgtaaataagatgtgtgtgaaccttactttg 95  Q
    ||||||||||||||||| |||| ||||||||||||||||| |||||       ||||||||||||| |||| ||| ||||||||||||||||||||||||    
T  26182318 gcataattgcattgagtttgtt-gtatacatgtgattgatgattgatgattgacttaaaactatttcattgcaaacaagatgtgtgtgaaccttactttg 26182220  T
Q  96 aagcatatgacttaaatgta-ttttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaacc 194  Q
    |||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  26182219 aagcatgtgacttgaatgtaattttcttaattctttttgattgataagttttgatattatctatttcatgacattg-ttccggtgctttgagtatgaacc 26182121  T
Q  195 aatttggataaggaaattgacccttacact 224  Q
    ||||| ||||||||||||||||||||||||    
T  26182120 aattttgataaggaaattgacccttacact 26182091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 13772956 - 13772807
Alignment:
Q  75 atgtgtgtgaaccttactttgaagcatatgacttaaatgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttc 174  Q
    |||||| ||||| ||||||  || ||||||||||  |||||||||||||| ||||||||||||| ||||||||||||||||||| | |||||||||||||    
T  13772956 atgtgtatgaactttacttaaaaacatatgacttgtatgtattttcttaaatctttttgattgagaagttttgatattatctatattatgacattgtttc 13772857  T
Q  175 tggtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13772856 ttgtgctttgagtatgaaccaatttggataaggaaattgactcttacact 13772807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 217
Target Start/End: Original strand, 24164450 - 24164592
Alignment:
Q  75 atgtgtgtgaaccttactttgaagcatatgacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgttt 173  Q
    |||||||| ||| |||| |||||||||||||||| |||||||||| |||| || || |||||||| ||||||||||| ||||||||| |||||||||||     
T  24164450 atgtgtgtaaactttaccttgaagcatatgactttaatgtatttttcttattttttcttgattgagaagttttgatactatctattttatgacattgtt- 24164548  T
Q  174 ctggtgctttgagtatgaaccaatttggataaggaaattgaccc 217  Q
    || |||||||||||||||||||||||||||||||||||||||||    
T  24164549 cttgtgctttgagtatgaaccaatttggataaggaaattgaccc 24164592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 32449784 - 32449664
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || ||||||||||||||||||||||||||    
T  32449784 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaaccaatttgga 32449686  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||    
T  32449685 taaggaaattgacccttacact 32449664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 34636875 - 34636995
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || |||||||| |||||||||||||||||    
T  34636875 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgggtatgaaccaatttgga 34636973  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||    
T  34636974 taaggaaattgacccttacact 34636995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 23260168 - 23260049
Alignment:
Q  105 acttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggat 203  Q
    ||||||||||||||| |||| |||||||| ||||| ||||||||||| |||||||||  || ||||||| || |||||||||||||||||||||||||||    
T  23260168 acttaaatgtatttttcttatttcttttttattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaaccaatttggat 23260070  T
Q  204 aaggaaattgacccttacact 224  Q
    |||||||||||||||||||||    
T  23260069 aaggaaattgacccttacact 23260049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 10751145 - 10751027
Alignment:
Q  106 cttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggata 204  Q
    |||||||||||||| |||| |||||||| ||||| ||||||||||| ||||||||   || ||||||| || ||||||||||||||||||||||||||||    
T  10751145 cttaaatgtatttttcttatttcttttttattgagaagttttgatactatctattatgtggcattgtt-cttgtgctttgagtatgaaccaatttggata 10751047  T
Q  205 aggaaattgacccttacact 224  Q
    ||||||||||||||||||||    
T  10751046 aggaaattgacccttacact 10751027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 20559494 - 20559600
Alignment:
Q  114 tattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattg 213  Q
    |||||||||| |||||||||||||| |||||||| || ||||||||| ||| ||||||| || ||||||||||||||||||||||||||||| |||||||    
T  20559494 tattttcttatttctttttgattgagaagttttggtagtatctattt-atggcattgtt-cttgtgctttgagtatgaaccaatttggataaagaaattg 20559591  T
Q  214 acccttaca 222  Q
    |||||||||    
T  20559592 acccttaca 20559600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 31276036 - 31275943
Alignment:
Q  119 tcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaatt 212  Q
    ||||| ||||||||||| || ||||||||||||||||||||| |||||||| ||||| ||| ||| ||||||||||||||||||||||||||||    
T  31276036 tcttatttctttttgatcgagaagttttgatattatctattttatgacattatttctcgtgttttaagtatgaaccaatttggataaggaaatt 31275943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 11166149 - 11166052
Alignment:
Q  125 ttctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    ||||||||||| || ||| ||| ||| ||||||||| |   |||||||| | ||||||| |||||||||||||||||||| |||||||||||||||||    
T  11166149 ttctttttgatcgagaagattttatactatctattttagagcattgtttattgtgctttcagtatgaaccaatttggatacggaaattgacccttaca 11166052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 848 - 995
Alignment:
Q  75 atgtgtgtgaaccttactttgaagcatatgacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgttt 173  Q
    |||||||||||| ||||||  ||  ||||||||| |||||||||| |||| |||||||||||||||||||||||||||| |||| || ||||||||||||    
T  848 atgtgtgtgaactttacttaaaa--atatgacttgaatgtatttttcttatttctttttgattgataagttttgatattttctactttatgacattgttt 945  T
Q  174 ctggtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
     ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  946 atggtgctttga-tatgaaccaatttggataaggaaattgacccttacact 995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 1856 - 1736
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || |||||||| |||||||||||||||||    
T  1856 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgggtatgaaccaatttgga 1758  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||    
T  1757 taaggaaattgacccttacact 1736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 120 - 240
Alignment:
Q  104 gacttaaatgtatttt-cttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttgga 202  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||  || ||||||| || |||||||||||||||| |||||||||    
T  120 gacttaaatgtatttttcttatttctttttgattgagaagttttgatactatctattttgtggcattgtt-cttgtgctttgagtatgaatcaatttgga 218  T
Q  203 taaggaaattgacccttacact 224  Q
    ||||||||||||||||||||||    
T  219 taaggaaattgacccttacact 240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 242552 - 242449
Alignment:
Q  116 ttttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgac 215  Q
    ||||||||||||||||||||||| |||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  242552 ttttcttaattctttttgattgagaagttttgatatcatctaatttataacattgtttcttgtgctttgagtatgaaccaatttgaacaaggaaattgac 242453  T
Q  216 cctt 219  Q
    ||||    
T  242452 cctt 242449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 32840 - 32743
Alignment:
Q  126 tctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttacact 224  Q
    ||||||||||||| ||||||||||| |||||||||  || | ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32840 tctttttgattgagaagttttgatactatctattttgtggctttgtt-cttgtgctttgagtatgaaccaatttggataaggaaattgacccttacact 32743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 2219 - 2122
Alignment:
Q  125 ttctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    ||||||||||| || ||| ||| ||| ||||||||| |   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2219 ttctttttgatcgagaagattttatactatctattttagagcattgtttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttaca 2122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 356472 - 356362
Alignment:
Q  112 tgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaat 211  Q
    ||||| || ||| ||||||||||| || ||| ||| ||| ||||||||| |   |||||||||| |||||||||||||||||||||||| ||||||||||    
T  356472 tgtatatttttatttctttttgatcgagaagattttatactatctattttagagcattgtttcttgtgctttgagtatgaaccaatttgaataaggaaat 356373  T
Q  212 tgacccttaca 222  Q
    |||||||||||    
T  356372 tgacccttaca 356362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 11407 - 11504
Alignment:
Q  125 ttctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    |||||||||||||| ||  ||| ||| ||||||||| |   |||||||| | |||||||||||||||||||||||||||||||||||||| |||||||    
T  11407 ttctttttgattgagaaaattttatactatctattttagagcattgttttttgtgctttgagtatgaaccaatttggataaggaaattgatccttaca 11504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 89867 - 89964
Alignment:
Q  125 ttctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttaca 222  Q
    ||||||||||  || ||| ||| ||| ||||||||| |   |||||||| | ||||||| ||||||| |||||||||||| | |||||||||||||||    
T  89867 ttctttttgaccgagaagattttatactatctattttagagcattgtttattgtgctttaagtatgacccaatttggataggaaaattgacccttaca 89964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University