View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9920_low_35 (Length: 239)

Name: NF9920_low_35
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9920_low_35
NF9920_low_35
[»] chr3 (3 HSPs)
chr3 (1-223)||(1565654-1565876)
chr3 (10-66)||(9480209-9480265)
chr3 (10-68)||(36198917-36198975)
[»] chr1 (1 HSPs)
chr1 (12-66)||(43040186-43040240)
[»] chr5 (1 HSPs)
chr5 (11-68)||(43427784-43427841)
[»] chr7 (2 HSPs)
chr7 (12-68)||(253078-253134)
chr7 (20-64)||(47178655-47178699)
[»] chr4 (4 HSPs)
chr4 (11-66)||(53028019-53028074)
chr4 (10-68)||(50892225-50892283)
chr4 (179-220)||(12908656-12908697)
chr4 (15-64)||(45881558-45881607)
[»] chr8 (5 HSPs)
chr8 (14-64)||(4752830-4752880)
chr8 (10-68)||(26689722-26689780)
chr8 (11-68)||(31584886-31584943)
chr8 (13-61)||(15804377-15804425)
chr8 (14-66)||(41337658-41337709)
[»] chr2 (1 HSPs)
chr2 (10-47)||(10342743-10342780)
[»] chr6 (1 HSPs)
chr6 (14-66)||(10395291-10395343)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1565876 - 1565654
Alignment:
Q  1 actgtaccagaggggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagctagtacaaacatggaagtttgtcatttacatttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1565876 actgtaccagaggggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagctagtacaaacatggaagtttgtcatttacatttct 1565777  T
Q  101 cgatatgcaggtgttagtaaacataaaagagaaaaatgaagtacaagataacagttttatttcatagtagaattcttcagctaccttttcacgacttctt 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1565776 cgatatgcaggtgttagtaagcataaaagagaaaaatgaagtacaagataacagttttatttcatagtagaattcttcagctaccttttcacgacttctt 1565677  T
Q  201 ccgctaattattgcagttggaaa 223  Q
    |||||||||||||||||||||||    
T  1565676 ccgctaattattgcagttggaaa 1565654  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 9480209 - 9480265
Alignment:
Q  10 gaggggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagct 66  Q
    ||||| |||||||||||||||||||||||||| ||||| | ||||||||||| ||||    
T  9480209 gagggtatttgaactctgtcccttgaggttactaggtcaaactcttaccactaagct 9480265  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 36198917 - 36198975
Alignment:
Q  10 gaggggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagctag 68  Q
    |||||||||||||||| || ||||||||||||||||   ||||||||||||| ||||||    
T  36198917 gaggggatttgaactcagtaccttgaggttacaaggctaagctcttaccactaagctag 36198975  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 43040186 - 43040240
Alignment:
Q  12 ggggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagct 66  Q
    |||||||||||||| ||| |||||||||||||||||  |||||||||||||||||    
T  43040186 ggggatttgaactccgtctcttgaggttacaaggtcaggctcttaccactgagct 43040240  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 43427841 - 43427784
Alignment:
Q  11 aggggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagctag 68  Q
    |||||||||||||||  |||||||||||||||||| | | ||||||||||||||||||    
T  43427841 aggggatttgaactccctcccttgaggttacaaggccaaactcttaccactgagctag 43427784  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 253078 - 253134
Alignment:
Q  12 ggggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagctag 68  Q
    ||||||||||||| ||| |||| |||||||||||   ||||||||||||||||||||    
T  253078 ggggatttgaactttgtaccttaaggttacaaggctaagctcttaccactgagctag 253134  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 47178699 - 47178655
Alignment:
Q  20 gaactctgtcccttgaggttacaaggtcgagctcttaccactgag 64  Q
    ||||| ||||||||||||||||||| || ||||||||||| ||||    
T  47178699 gaactatgtcccttgaggttacaagatcaagctcttaccagtgag 47178655  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 53028019 - 53028074
Alignment:
Q  11 aggggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagct 66  Q
    |||| ||||||||| ||||||||||||||| |||||| | |||||| |||||||||    
T  53028019 agggaatttgaactttgtcccttgaggttataaggtcaaactcttatcactgagct 53028074  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 50892283 - 50892225
Alignment:
Q  10 gaggggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagctag 68  Q
    ||||||||| |||||| |  ||||||||||||||||   ||||||||||||||||||||    
T  50892283 gaggggattagaactcagcaccttgaggttacaaggctaagctcttaccactgagctag 50892225  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 12908656 - 12908697
Alignment:
Q  179 agctaccttttcacgacttcttccgctaattattgcagttgg 220  Q
    ||||||||| || ||||||||||||||||||||||| |||||    
T  12908656 agctaccttgtcgcgacttcttccgctaattattgctgttgg 12908697  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 45881607 - 45881558
Alignment:
Q  15 gatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgag 64  Q
    ||||||||||||||  |||||||| |||| ||| ||||||||||||||||    
T  45881607 gatttgaactctgtttcttgaggtaacaaagtcaagctcttaccactgag 45881558  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 4752830 - 4752880
Alignment:
Q  14 ggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgag 64  Q
    |||||||||||||||| |||||| |||||| ||| || |||||||||||||    
T  4752830 ggatttgaactctgtctcttgagattacaaagtcaagttcttaccactgag 4752880  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 26689722 - 26689780
Alignment:
Q  10 gaggggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagctag 68  Q
    ||||||||||| |||| |||||| |||||||||||| | | |||||| |||||||||||    
T  26689722 gaggggatttgtactccgtccctggaggttacaaggccaaactcttatcactgagctag 26689780  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 31584943 - 31584886
Alignment:
Q  11 aggggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagctag 68  Q
    ||||||||||||||| || |||||||||||||| |   ||||||||||| ||||||||    
T  31584943 aggggatttgaactcagtaccttgaggttacaatgctaagctcttaccattgagctag 31584886  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 15804377 - 15804425
Alignment:
Q  13 gggatttgaactctgtcccttgaggttacaaggtcgagctcttaccact 61  Q
    |||||||||| ||  |||||||||||||||||||| | |||||||||||    
T  15804377 gggatttgaaatccttcccttgaggttacaaggtcaaactcttaccact 15804425  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 41337709 - 41337658
Alignment:
Q  14 ggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagct 66  Q
    |||||||||||| | |||||||||||| |||||| | ||||||||||||||||    
T  41337709 ggatttgaactccg-cccttgaggttataaggtcaaactcttaccactgagct 41337658  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 10342780 - 10342743
Alignment:
Q  10 gaggggatttgaactctgtcccttgaggttacaaggtc 47  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  10342780 gaggggatttgaactcagtcctttgaggttacaaggtc 10342743  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 10395343 - 10395291
Alignment:
Q  14 ggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagct 66  Q
    ||||||||||||||||| | ||||| |||| ||| ||||||||||||| ||||    
T  10395343 ggatttgaactctgtccgtcgaggtgacaaagtcaagctcttaccactaagct 10395291  T

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