View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_low_39 (Length: 232)
Name: NF9920_low_39
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 8349519 - 8349312
Alignment:
| Q |
10 |
agcagcagagacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatcttacgaaacaagagcattc |
109 |
Q |
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| T |
8349519 |
agcagcagtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagaattttgttaaacttatcttacgaaacaagagcattc |
8349420 |
T |
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| Q |
110 |
aacaagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttggttagcaaacaagagcgt |
209 |
Q |
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| T |
8349419 |
aataagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacaattggttagtaaacaagagcgt |
8349320 |
T |
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| Q |
210 |
gtcacaac |
217 |
Q |
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| T |
8349319 |
gtcacaac |
8349312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 207
Target Start/End: Original strand, 11993792 - 11993957
Alignment:
| Q |
42 |
taaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatcttacgaaacaagagcattcaacaagctcttacaattgtgaagtttggtaaa |
141 |
Q |
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| T |
11993792 |
taaatcacttgaactaatgtttttggaagatagtttttttaaacttctcttacaaaa-aagagcattcaagaagctattccaattgcgaagcgaggtaca |
11993890 |
T |
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| Q |
142 |
aaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttgg-ttagcaaacaagagc |
207 |
Q |
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| T |
11993891 |
agatggaaggttggtagtggagagaatatccgggtgttttatgacaattggtttagcaaacaagagc |
11993957 |
T |
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