View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_low_40 (Length: 229)
Name: NF9920_low_40
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_40 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 17868652 - 17868877
Alignment:
| Q |
3 |
accgacacatatattcgatacaaacgaaggatcaagtgaaagaaatatgcatgcttatgctacatgccaaaatacaaaacatcacactagcttttatttt |
102 |
Q |
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| T |
17868652 |
accgacacatatatttgatacaaacgaaggatcaagggaaagaaatatgcatgcttatgctacatgccaaaatacaaa-cttcacactagcttttatttt |
17868750 |
T |
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| Q |
103 |
acttatatgctcacatttatccataaaagccaaccccattgatccataattcaaatatctttatgacttatagaactaccttttcccccttgacaagatg |
202 |
Q |
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| T |
17868751 |
atctatatgctcacatttatccataaaagccaaccccattgaaccataattcaaatatctttatgacttatagaactaccttttcccccttgacaagatg |
17868850 |
T |
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| Q |
203 |
accatcaatgtctctagtgcttttgct |
229 |
Q |
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| T |
17868851 |
accatcaatatctctagtgcttttgct |
17868877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 17851626 - 17851854
Alignment:
| Q |
1 |
tcaccgacacatatattcgatacaaacgaaggatcaagtgaaagaaatatgcatgcttatgctacatgccaaaatacaaaacatcacactagcttttatt |
100 |
Q |
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|||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
17851626 |
tcaccgacacatttattcgatacaaacgaaggttcaagggaaacaaatatgcatgcttatgctacatgccattatac-aaacatcacactagcttttatt |
17851724 |
T |
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| Q |
101 |
ttacttatatgctcacatttatccataaaagccaaccccattgatccataattcaaatatc--tttatgacttatagaactaccttttcccccttgacaa |
198 |
Q |
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| T |
17851725 |
ttatttatatgctcacatttatccataaaagccaa-cccattgaactataactccatattcaaatagtggcttatagaactacattttctcccttgacaa |
17851823 |
T |
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| Q |
199 |
gatgaccatcaatgtctctagtgcttttgct |
229 |
Q |
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| T |
17851824 |
gatgaccatcaatatctctagtgcttttgct |
17851854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 17817324 - 17817475
Alignment:
| Q |
79 |
aaacatcacactagcttttattttacttatatgctcacatttatccataaaagccaaccccattgatccataattcaaatatc--tttatgacttataga |
176 |
Q |
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| T |
17817324 |
aaacatcacactagcttttattttatttatatgctcacatttatccataaaagccaa-cccattgaactataactccatattcaaatagtggcttataga |
17817422 |
T |
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| Q |
177 |
actaccttttcccccttgacaagatgaccatcaatgtctctagtgcttttgct |
229 |
Q |
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| T |
17817423 |
actacattttctcccttgacaagatgaccatcaatatctctagtgcatttgct |
17817475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 17843062 - 17843169
Alignment:
| Q |
1 |
tcaccgacacatatattcgatacaaacgaaggatcaagtgaaagaaatatgcatgcttatgctacatgccaaaatacaaaacatcacactagcttttatt |
100 |
Q |
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| T |
17843062 |
tcaccgacacatttattcgatacaaacaaaggatcaagggaagcaaatatgcatgtttatgctacatgccattatac-aaacatcaaactagcttttatt |
17843160 |
T |
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| Q |
101 |
ttacttata |
109 |
Q |
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||| ||||| |
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| T |
17843161 |
ttatttata |
17843169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 17843279 - 17843339
Alignment:
| Q |
169 |
cttatagaactaccttttcccccttgacaagatgaccatcaatgtctctagtgcttttgct |
229 |
Q |
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| T |
17843279 |
cttatagagctacattttcccccttgacaagatgaccatcaatatctctagtgcatttgct |
17843339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 17920534 - 17920598
Alignment:
| Q |
156 |
aatatctttatgacttatag---aactaccttttcccccttgacaagatgaccatcaatgtctct |
217 |
Q |
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| T |
17920534 |
aatatcttcatgacttatagtccatctactttttcccccttaacaagatgaccatcaatatctct |
17920598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 17822122 - 17822159
Alignment:
| Q |
190 |
ccttgacaagatgaccatcaatgtctctagtgcttttg |
227 |
Q |
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| T |
17822122 |
ccttgacaagatgagcatccatgtctctagtgcttttg |
17822159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 17843210 - 17843243
Alignment:
| Q |
105 |
ttatatgctcacatttatccataaaagccaaccc |
138 |
Q |
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| T |
17843210 |
ttatatgctcacatttatccataaaagtcaaccc |
17843243 |
T |
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