View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_low_46 (Length: 211)
Name: NF9920_low_46
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 49172227 - 49172404
Alignment:
| Q |
15 |
ataggccatagggggttctcagattgggatattatttatacttttctcataataggaattatacggggtaacttgtaacctcattttcaaattttcttac |
114 |
Q |
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| T |
49172227 |
ataggccataggg--ttctcagattgggatattatttatacttttctcataataggaattatacggggtaacttgtaacctcattttcaaattttcttac |
49172324 |
T |
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| Q |
115 |
aaggtcaatattcattaatgttcagtgtaacaataaaatgataattaagctcttaatggttgatagtcaaagaggaacat |
194 |
Q |
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| T |
49172325 |
aaggtcaatattcattaatgttcagtgtaacaataaaatgataattaagctcttaatggttgatagtcaaagaggaacat |
49172404 |
T |
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