View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_low_5 (Length: 427)
Name: NF9920_low_5
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 33093202 - 33093596
Alignment:
| Q |
19 |
ctttactaactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctgttagcaactttatggaaccaagagaaagcaaaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33093202 |
ctttactaactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctgttggcaactttatggaaccaagagaaagcaaaaa |
33093301 |
T |
|
| Q |
119 |
tgttacttcatacttcattgattcgttggtgagtttgaaacacttaacccatcttgatttgtcactttcatgtgttactgatgatatgcttatatgtgta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
33093302 |
tgttacttcatacttcattgattcgttggtgagtttgaaacacttaacccatcttgatttgtcactttcatgtgttactgatgatatgcttatctctgta |
33093401 |
T |
|
| Q |
219 |
gcaaatgaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33093402 |
gcaaatgaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgc |
33093501 |
T |
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| Q |
319 |
agcatctaaatcttcaaaaggcaaagtttttgaatgatgatgacaactcctcaatgttgtatccatatcttcgcgatttggtgtctataaatgtc |
413 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33093502 |
agcatctaaatcttcaaaatgcaaagtttttgaatgatgatgacaactcctcaatgttgtatccatatcttcgcgatttggtgtctataaatgtc |
33093596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 25 - 356
Target Start/End: Original strand, 33708295 - 33708626
Alignment:
| Q |
25 |
taactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctgttagcaactttatggaaccaagagaaagcaaaaatgttac |
124 |
Q |
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|||| ||||||| ||||||||||||||||| ||||||||||||| |||||| ||||||| | |||||| ||| | |||||||| |||||||||| |
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| T |
33708295 |
taacacatgctgttattgcttctgcaatctgccagagaccaagtttaagttctttatctgttaccgactttaaagaagctagagaaagagaaaatgttac |
33708394 |
T |
|
| Q |
125 |
ttcatacttcattgattcgttggtgagtttgaaacacttaacccatcttgatttgtcactttcatgtgttactgatgatatgcttatatgtgtagcaaat |
224 |
Q |
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||| | |||||||||||| ||| |||||||||| | |||||| |||||||||||| |||||| |||||||| ||||| | | || || | |
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| T |
33708395 |
ttcgtgcttcattgattcattgatgagtttgaagcgcttaacttgtcttgatttgtcctattcatgcattactgattcgttgctttactctctaacactt |
33708494 |
T |
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| Q |
225 |
gaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatc |
324 |
Q |
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| || ||||||||| ||||| |||||||| |||| | ||||| ||||||| ||| ||| ||||||| |||||||||||||||| ||| | ||||||||| |
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| T |
33708495 |
gcagctcttcctttgaggaaacttgtcctccaaggtcgctgccaatatacttataccggtatctcttgtttcttgtcaaagtgtcgatctctgcagcatc |
33708594 |
T |
|
| Q |
325 |
taaatcttcaaaaggcaaagtttttgaatgat |
356 |
Q |
| |
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|| || ||||| |||||||||||||||||| |
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| T |
33708595 |
tagatattcaacgtgcaaagtttttgaatgat |
33708626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 33714161 - 33714317
Alignment:
| Q |
25 |
taactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctgttagcaactttatggaaccaagagaaagcaaaaatgttac |
124 |
Q |
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|||| |||||||||||||||||||||||||| ||||||| | ||| |||||| ||| ||| |||||||| |||| | ||||||| |||||||||| |
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| T |
33714161 |
taacacatgctggtattgcttctgcaatctaccagagaccgactttaagttctttatctcttaccaactttaaggaagctagagaaatagaaaatgttac |
33714260 |
T |
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| Q |
125 |
ttcatacttcattgattcgttggtgagtttgaaacacttaacccatcttgatttgtc |
181 |
Q |
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|| |||||||||||||| ||||||||||| || | |||||| |||||||||||| |
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| T |
33714261 |
tttgtacttcattgattcattggtgagtttaaagcgcttaacttgtcttgatttgtc |
33714317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 356
Target Start/End: Original strand, 36810493 - 36810625
Alignment:
| Q |
224 |
tgaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcat |
323 |
Q |
| |
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||||| ||||||||| ||| | ||| |||| |||||||||| | | ||||||||| |||||||||||| | ||||||||||| ||||| | |||| | |
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| T |
36810493 |
tgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagtgtcgatttctacagctt |
36810592 |
T |
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| Q |
324 |
ctaaatcttcaaaaggcaaagtttttgaatgat |
356 |
Q |
| |
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||| |||||||| | |||||||||||||||||| |
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| T |
36810593 |
ctagatcttcaagatgcaaagtttttgaatgat |
36810625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 33714390 - 33714461
Alignment:
| Q |
285 |
atctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaaggcaaagtttttgaatgat |
356 |
Q |
| |
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||||||| |||||||||||| ||| ||| | ||||||||||| |||||||| |||||||||||||||||| |
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| T |
33714390 |
atctcttgtttcttgtcaaattgtcgatctctgcagcatctagatcttcaatgtgcaaagtttttgaatgat |
33714461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 27005043 - 27005107
Alignment:
| Q |
24 |
ctaactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctgttag |
88 |
Q |
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||||| |||| ||||||||||||||||||||| ||||||| | |||| ||||||||||||||| |
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| T |
27005043 |
ctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctctgttag |
27005107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 356
Target Start/End: Original strand, 37580306 - 37580429
Alignment:
| Q |
233 |
tcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatctt |
332 |
Q |
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|||||| ||||| |||||||| ||||||||| | | || ||||||| ||||| | |||||| |||||||||||| || || |||||||| || || |
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| T |
37580306 |
tcctttgaggaaacttgtcctcaaagattgctccaactacacatattctgggatatattatttattgtcaaagtgtcaatcactgaagcatctagatatt |
37580405 |
T |
|
| Q |
333 |
caaaaggcaaagtttttgaatgat |
356 |
Q |
| |
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||||| |||| ||||||||||||| |
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| T |
37580406 |
caaaaagcaacgtttttgaatgat |
37580429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 18723872 - 18723944
Alignment:
| Q |
281 |
cgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaaggcaaagtttttgaat |
353 |
Q |
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||||||||||||| |||||||||||||| ||||| |||| |||||| ||||| |||| |||| ||||||||| |
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| T |
18723872 |
cgggatctcttatctcttgtcaaagtgtcgatttctgcaacatctagatctttaaaatgcaatctttttgaat |
18723944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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