View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_low_8 (Length: 404)
Name: NF9920_low_8
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 239 - 394
Target Start/End: Original strand, 27250132 - 27250287
Alignment:
| Q |
239 |
ttgcttcaccagggcgtggtattttagccatggatgaatccaatgctacatgtggaaagcgtttggcttcaattgggctagaaaacactgaagctaaccg |
338 |
Q |
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| T |
27250132 |
ttgcttcaccagggcgtggtattttagccatggatgaatccaatgctacatgtggaaagcgtttggcttcaattgggctagaaaacactgaagctaaccg |
27250231 |
T |
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| Q |
339 |
tcaagcatggcgtacccttcttgtgacagttccatctcttggagactatatctctg |
394 |
Q |
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| T |
27250232 |
ccaagcatggcgtacccttcttgtgacagttccatctcttggagactatatctctg |
27250287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 239 - 394
Target Start/End: Original strand, 21194359 - 21194514
Alignment:
| Q |
239 |
ttgcttcaccagggcgtggtattttagccatggatgaatccaatgctacatgtggaaagcgtttggcttcaattgggctagaaaacactgaagctaaccg |
338 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21194359 |
ttgcttcaccagggcgtggaattttagccatggatgaatccaatgctacatgtggaaagcgtttggcttcaattgggctagaaaacactgaagctaaccg |
21194458 |
T |
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| Q |
339 |
tcaagcatggcgtacccttcttgtgacagttccatctcttggagactatatctctg |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21194459 |
ccaagcatggcgtacccttcttgtgacagttccatctcttggagactatatctctg |
21194514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 21194139 - 21194279
Alignment:
| Q |
19 |
agtcctaaggtctaagatagagggagaaggactctgagttgtaaatttgttgaaactcttaaaagtgatgtgatacataatggtttttaaaattttgaca |
118 |
Q |
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| T |
21194139 |
agtcctaaggtctaagatagagggagaaggactctgagttgtaaatttgttgaaactcttaaaagtgatgtgatacataatggtttttaaaattttgaca |
21194238 |
T |
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| Q |
119 |
agtaactatgctcaaaataataaaattctgtttttacatca |
159 |
Q |
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| T |
21194239 |
agtaactctgctcaaaataataaaattctgtttttacatca |
21194279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 27249912 - 27250051
Alignment:
| Q |
19 |
agtcctaaggtctaagatagagggagaaggactctgagttgtaaatttgttgaaactcttaaaagtgatgtgatacataatggtttttaaaattttgaca |
118 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27249912 |
agtcctaaggtttaagatagagggagaatgactctgagttgtaaatttgttgaaactcttaaaactgatgtgatacataatggtttttaaaattttgaca |
27250011 |
T |
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| Q |
119 |
agtaactatgctcaaaataataaaattctgtttttacatc |
158 |
Q |
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| T |
27250012 |
agtaactctgctcaaaataataaaattctctttttacatc |
27250051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 239 - 394
Target Start/End: Original strand, 27261961 - 27262116
Alignment:
| Q |
239 |
ttgcttcaccagggcgtggtattttagccatggatgaatccaatgctacatgtggaaagcgtttggcttcaattgggctagaaaacactgaagctaaccg |
338 |
Q |
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||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| || |||||||||||||||||||||| ||||| |||| |||||| |
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| T |
27261961 |
ttgcttcaccaggacgtggtattttggccatggatgagtccaatgctacttgtgggaaaagtttggcttcaattgggctagagaacaccgaagttaaccg |
27262060 |
T |
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| Q |
339 |
tcaagcatggcgtacccttcttgtgacagttccatctcttggagactatatctctg |
394 |
Q |
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| |||||||||||| ||||| ||||||||||||||||||||||| || ||||||| |
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| T |
27262061 |
cccagcatggcgtactcttctggtgacagttccatctcttggagagtacatctctg |
27262116 |
T |
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