View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9920_low_9 (Length: 387)
Name: NF9920_low_9
Description: NF9920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9920_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 377
Target Start/End: Original strand, 31060471 - 31060829
Alignment:
| Q |
19 |
catgtgacagagaaggtgggtaagaaactggcggagccgtttggggagttcctgctgcatatgccaacacaagttctgcatgcatgtgtctcaaaaagaa |
118 |
Q |
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| T |
31060471 |
catgtgacagagaaggtgggtaagaaactggcggagccgtttggggagttcctgcggcatatgccaacacaagttctgcatgcatgtgttttaaaaagaa |
31060570 |
T |
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| Q |
119 |
atggagatgatgacttaaaaatggtgaatcgaaatttaaaactatgaaatatccttttaaaactatgatgcatgcgtcgcattccttaatgacgcatgct |
218 |
Q |
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| T |
31060571 |
atggagatgatgacttaaaaatggtgaatcgaaatttaaaactatgaaatatccttttaaaactatgatgcatgcgtcacattccttaatgacgcatgct |
31060670 |
T |
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| Q |
219 |
gaagattgaataattcgtttttatctttagtccactaagcatttgcgtcaaattaatagcctagtctactaaacaatatttatctaaatacatagtacat |
318 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31060671 |
gaagattgaataattcatttttatctttagtccactaagcatttgcgtcaaattaataacctagtctactaaacaatatttatctaaatacatagtacat |
31060770 |
T |
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| Q |
319 |
ataaaatcagtgtgaaagttaaaatagnnnnnnntacttataatttaaaatcacctatg |
377 |
Q |
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| T |
31060771 |
ataaaatcagtgtgaaagttaaaatagaaaaaaatacttataatttcaaatcacctatg |
31060829 |
T |
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