View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9921_1 (Length: 312)

Name: NF9921_1
Description: NF9921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9921_1
NF9921_1
[»] chr4 (22 HSPs)
chr4 (195-312)||(42561275-42561392)
chr4 (19-104)||(42577367-42577453)
chr4 (33-143)||(41534811-41534922)
chr4 (45-148)||(45841918-45842021)
chr4 (57-104)||(49062472-49062519)
chr4 (62-136)||(2265760-2265834)
chr4 (63-125)||(33702355-33702417)
chr4 (10-87)||(11014473-11014550)
chr4 (13-104)||(35218384-35218475)
chr4 (45-104)||(50910997-50911056)
chr4 (63-104)||(6236110-6236151)
chr4 (63-104)||(13012791-13012832)
chr4 (63-104)||(20129916-20129957)
chr4 (63-104)||(25931310-25931351)
chr4 (63-104)||(26438802-26438843)
chr4 (63-104)||(34406807-34406848)
chr4 (63-104)||(36381872-36381913)
chr4 (60-89)||(40731421-40731450)
chr4 (63-104)||(43356507-43356548)
chr4 (63-104)||(47501376-47501417)
chr4 (13-113)||(35218779-35218878)
chr4 (41-81)||(41534504-41534544)
[»] chr7 (8 HSPs)
chr7 (13-143)||(35248818-35248948)
chr7 (46-117)||(23938960-23939031)
chr7 (63-104)||(3113646-3113687)
chr7 (63-104)||(5556064-5556105)
chr7 (13-114)||(23939379-23939480)
chr7 (45-78)||(25609566-25609599)
chr7 (63-104)||(36631417-36631458)
chr7 (46-106)||(25694317-25694377)
[»] chr1 (8 HSPs)
chr1 (13-191)||(6131309-6131494)
chr1 (13-149)||(6131761-6131897)
chr1 (13-148)||(7280519-7280654)
chr1 (13-87)||(45423056-45423130)
chr1 (52-141)||(25484267-25484356)
chr1 (45-87)||(5865867-5865909)
chr1 (13-106)||(47356470-47356561)
chr1 (40-82)||(47356651-47356693)
[»] chr2 (10 HSPs)
chr2 (25-143)||(24774219-24774337)
chr2 (45-87)||(40440004-40440046)
chr2 (45-104)||(44329313-44329372)
chr2 (63-104)||(2286389-2286430)
chr2 (63-104)||(2957670-2957711)
chr2 (63-104)||(6403327-6403368)
chr2 (63-104)||(17444564-17444605)
chr2 (63-104)||(35963292-35963333)
chr2 (63-104)||(41251157-41251198)
chr2 (63-104)||(42442586-42442627)
[»] chr5 (18 HSPs)
chr5 (45-143)||(42036388-42036486)
chr5 (38-133)||(34765056-34765150)
chr5 (52-137)||(28109423-28109508)
chr5 (46-135)||(30471280-30471369)
chr5 (40-104)||(18966677-18966741)
chr5 (45-104)||(28108772-28108831)
chr5 (13-143)||(30463406-30463536)
chr5 (63-104)||(10036509-10036550)
chr5 (63-104)||(16333425-16333466)
chr5 (46-87)||(17644905-17644946)
chr5 (60-97)||(21098401-21098438)
chr5 (63-104)||(26282841-26282882)
chr5 (18-71)||(28108684-28108737)
chr5 (13-78)||(31064545-31064610)
chr5 (63-104)||(36293144-36293185)
chr5 (54-86)||(8213935-8213967)
chr5 (63-99)||(16155603-16155639)
chr5 (13-97)||(22964829-22964913)
[»] chr8 (9 HSPs)
chr8 (18-137)||(24535667-24535786)
chr8 (13-87)||(24536848-24536922)
chr8 (20-149)||(28991580-28991709)
chr8 (13-135)||(28427030-28427152)
chr8 (54-104)||(28992020-28992070)
chr8 (63-104)||(15838875-15838916)
chr8 (45-106)||(21543271-21543332)
chr8 (63-104)||(29727908-29727949)
chr8 (63-104)||(39915117-39915158)
[»] scaffold0004 (2 HSPs)
scaffold0004 (13-106)||(127420-127513)
scaffold0004 (13-135)||(128227-128349)
[»] scaffold0113 (2 HSPs)
scaffold0113 (18-148)||(47448-47578)
scaffold0113 (45-89)||(47087-47131)
[»] scaffold0515 (1 HSPs)
scaffold0515 (55-104)||(11824-11873)
[»] scaffold0152 (4 HSPs)
scaffold0152 (55-104)||(19394-19443)
scaffold0152 (55-104)||(33269-33318)
scaffold0152 (55-104)||(38220-38269)
scaffold0152 (60-97)||(37180-37217)
[»] chr3 (12 HSPs)
chr3 (52-104)||(4811570-4811622)
chr3 (45-87)||(314459-314501)
chr3 (13-78)||(46507948-46508013)
chr3 (13-104)||(45266246-45266337)
chr3 (45-104)||(54922171-54922230)
chr3 (49-87)||(37526303-37526341)
chr3 (63-104)||(6268949-6268990)
chr3 (63-104)||(19390749-19390790)
chr3 (63-104)||(22967967-22968008)
chr3 (63-104)||(34083645-34083686)
chr3 (63-104)||(39772393-39772434)
chr3 (63-104)||(40081265-40081306)
[»] chr6 (4 HSPs)
chr6 (45-104)||(22019205-22019264)
chr6 (63-104)||(399220-399261)
chr6 (63-104)||(34948307-34948348)
chr6 (40-104)||(4222431-4222495)
[»] scaffold0055 (1 HSPs)
scaffold0055 (60-102)||(12579-12621)
[»] scaffold0052 (1 HSPs)
scaffold0052 (60-102)||(71914-71956)
[»] scaffold0069 (1 HSPs)
scaffold0069 (63-104)||(18161-18202)
[»] scaffold0002 (1 HSPs)
scaffold0002 (63-104)||(479980-480021)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 195 - 312
Target Start/End: Complemental strand, 42561392 - 42561275
Alignment:
Q  195 caagtatggcttcttcatcatcttcttcttccaaaagacacccgacataccacggaattaggagccgaggaggaaaatgggtgactaaaacccgcgagcc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  42561392 caagtatggcttcttcatcatcttcttcttccaaaagacacccaacataccacggaattaggagccgaggaggaaaatgggtgactgaaatccgcgagcc 42561293  T
Q  295 tcgtaagaccaaccgcat 312  Q
    ||||||||||||||||||    
T  42561292 tcgtaagaccaaccgcat 42561275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 42577453 - 42577367
Alignment:
Q  19 tatagaggat-atgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    |||||||||| ||||||| ||||||| |||||||| |||| ||| ||||||||||||||||||||||||| ||||||||| ||||||    
T  42577453 tatagaggattatgcaaagttctgtaacattccgactaagtctcaatttattttgatttttcgactgaaacgtgcaaaatcgcaatt 42577367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 41534811 - 41534922
Alignment:
Q  33 aaaattctgtatcattccgaataagcctcgatttattttgattttt-cgactgaaatgtgcaaaattgcaattgatgctctgccagaaactgcactcaag 131  Q
    |||||| |||| |||| | ||||||| ||||||||||||||||||| |||| |||| |  ||||||   ||||||||||||||||| ||||||||| |||    
T  41534811 aaaattttgtagcatttcaaataagcttcgatttattttgattttttcgaccgaaacgcacaaaatcataattgatgctctgccaggaactgcacttaag 41534910  T
Q  132 tgcagctgagcc 143  Q
    || |||||||||    
T  41534911 tgaagctgagcc 41534922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 45841918 - 45842021
Alignment:
Q  45 cattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctctgccagaaactgcactcaagtgcagctgagccg 144  Q
    ||||| |||||| |||| | ||||||| ||||||| ||  ||| ||||||||||||||||||||||| ||||  |||| |||| |||||||||||||||     
T  45841918 cattcagaataaacctcaacttattttaatttttccaccaaaacgtgcaaaattgcaattgatgctcggccaagaactacacttaagtgcagctgagcca 45842017  T
Q  145 actg 148  Q
    ||||    
T  45842018 actg 45842021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 49062472 - 49062519
Alignment:
Q  57 gcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  49062472 gcctcaatttattttgatttttcaactaaaatgtgcaaaattgcaatt 49062519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 2265834 - 2265760
Alignment:
Q  62 gatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctctgccagaaactgcactcaagtgcag 136  Q
    ||||||||||||||||||||| ||||   | |||||  |||||| | ||||||||||||||||||| ||||||||    
T  2265834 gatttattttgatttttcgaccgaaacccgtaaaatcacaattggttctctgccagaaactgcacttaagtgcag 2265760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 33702355 - 33702417
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctctgccagaaactgca 125  Q
    |||||||||||||||||||  |||| |||||||||  |||||||||||||  |||||||||||    
T  33702355 atttattttgatttttcgatcgaaacgtgcaaaatcacaattgatgctctatcagaaactgca 33702417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 11014550 - 11014473
Alignment:
Q  10 aagaatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaa 87  Q
    ||||||||||||||||| | || ||| ||  |||  |||| |||||||  ||||||||||||||||||||||||||||    
T  11014550 aagaatatatatagagggtctgtaaagtttcgtagaattctgaataagtttcgatttattttgatttttcgactgaaa 11014473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 35218475 - 35218384
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    |||| ||||||| ||| |||||| ||| | |  ||||||| |||||||||||||||||||||||||| || |||  | | ||||||||||||    
T  35218475 aatacatatagatgatctgcaaagttccgcagtattccgactaagcctcgatttattttgatttttctaccgaaccgcgtaaaattgcaatt 35218384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 50911056 - 50910997
Alignment:
Q  45 cattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    |||| ||| |||| |||||||||||||||||||||||| |||   |||||||||||||||    
T  50911056 catttcgactaagtctcgatttattttgatttttcgaccgaaccatgcaaaattgcaatt 50910997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 6236151 - 6236110
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  6236151 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 6236110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 13012832 - 13012791
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  13012832 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 13012791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 20129957 - 20129916
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  20129957 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 20129916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 25931351 - 25931310
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  25931351 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 25931310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 26438802 - 26438843
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  26438802 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 26438843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 34406807 - 34406848
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  34406807 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 34406848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 36381872 - 36381913
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  36381872 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 36381913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 89
Target Start/End: Complemental strand, 40731450 - 40731421
Alignment:
Q  60 tcgatttattttgatttttcgactgaaatg 89  Q
    ||||||||||||||||||||||||||||||    
T  40731450 tcgatttattttgatttttcgactgaaatg 40731421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 43356548 - 43356507
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  43356548 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 43356507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 47501417 - 47501376
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  47501417 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 47501376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 35218779 - 35218878
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctct 112  Q
    |||| ||||||||||| | || ||||  ||| |||| | |||||||||| ||||||||||| || ||||| ||||  ||||||||  |||||||||||||    
T  35218779 aatacatatagaggatctacagaatttcgtagcatttcaaataagcctcaatttattttga-ttatcgaccgaaacatgcaaaatcacaattgatgctct 35218877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 41534504 - 41534544
Alignment:
Q  41 gtatcattccgaataagcctcgatttattttgatttttcga 81  Q
    |||| ||||||| |||||||| |||||||||||||||||||    
T  41534504 gtattattccgactaagcctcaatttattttgatttttcga 41534544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 35248818 - 35248948
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctct 112  Q
    |||| ||||||||||| |||| ||||||||| ||||||||||||| |||||||||||||||||||||||| || | |   |||||| |||||||||||||    
T  35248818 aatacatatagaggatctgcagaattctgtagcattccgaataaggctcgatttattttgatttttcgaccgagacgcttaaaattacaattgatgctct 35248917  T
Q  113 gccagaaactgcactcaagtgcagctgagcc 143  Q
    ||||| ||||||||| |||||||| ||||||    
T  35248918 gccaggaactgcacttaagtgcagttgagcc 35248948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 23939031 - 23938960
Alignment:
Q  46 attccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctctgccag 117  Q
    ||||||||||| |||||||||||||| |||||| ||| |||| |||||||||  |||||||||||| |||||    
T  23939031 attccgaataatcctcgatttattttaattttttgaccgaaacgtgcaaaatctcaattgatgctccgccag 23938960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 3113646 - 3113687
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  3113646 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 3113687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 5556105 - 5556064
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  5556105 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 5556064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 23939379 - 23939480
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctct 112  Q
    |||||||||| ||||| || ||| || || | |||||  |||||| || |||||||||||||||||  ||| ||| |||||||||  ||||| |||||||    
T  23939379 aatatatatacaggatctgtaaagttttgcagcattctaaataagtcttgatttattttgatttttaaacttaaacgtgcaaaatcacaattaatgctct 23939478  T
Q  113 gc 114  Q
    ||    
T  23939479 gc 23939480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 25609566 - 25609599
Alignment:
Q  45 cattccgaataagcctcgatttattttgattttt 78  Q
    |||||| |||||||||||||||||||||||||||    
T  25609566 cattccaaataagcctcgatttattttgattttt 25609599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 36631458 - 36631417
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  36631458 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 36631417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 25694317 - 25694377
Alignment:
Q  46 attccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattga 106  Q
    |||||||||||| |||||||| ||||  ||||||||| |||| | ||||||| ||||||||    
T  25694317 attccgaataagtctcgattttttttattttttcgaccgaaacgcgcaaaatcgcaattga 25694377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 6131494 - 6131309
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctct 112  Q
    |||| ||||||||||| |  ||| ||| ||| |||| ||| ||||||||||||| ||||||||||| ||| |||| | ||||||||||||||||||||||    
T  6131494 aatacatatagaggatctataaagttccgtaacatttcgagtaagcctcgatttgttttgattttttgaccgaaacgcgcaaaattgcaattgatgctct 6131395  T
Q  113 gccagaaactgcactcaagtgcagctgagccgactg-------ctcatcgttagttaactatagctcgcttacctaccggtagtta 191  Q
    |||| |||||| | | ||||||| ||||||| ||||       |||| || |||||||||||||||| |||||| | |||||||||    
T  6131394 gccaaaaactgtatttaagtgcaactgagccaactgcagctgcctcaacgatagttaactatagctcacttaccgaacggtagtta 6131309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 6131761 - 6131897
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctct 112  Q
    |||| ||||||||||| |||||| ||  ||| ||||  ||| ||| ||||||||||||||||||||||||  ||| | ||| ||| | ||||||||||||    
T  6131761 aatacatatagaggatctgcaaagtttcgtagcattatgaaaaaggctcgatttattttgatttttcgacaaaaacgcgcataatcgtaattgatgctct 6131860  T
Q  113 gccagaaactgcactcaagtgcagctgagccgactgc 149  Q
    |||| |||||||||| ||||| |||||| || |||||    
T  6131861 gccaaaaactgcacttaagtgtagctgaaccaactgc 6131897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 7280654 - 7280519
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctct 112  Q
    |||| ||||||||||| |||||| |||  || |||| | ||||||||| |||||| |||||||||| || || ||   |||||||  ||||||||| |||    
T  7280654 aataaatatagaggatctgcaaagttccttaacatttcaaataagccttgatttagtttgattttttgattggaacacgcaaaatcacaattgatgatct 7280555  T
Q  113 gccagaaactgcactcaagtgcagctgagccgactg 148  Q
    ||||| ||||| | | ||||||| ||||||| ||||    
T  7280554 gccaggaactgtatttaagtgcatctgagccaactg 7280519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 45423130 - 45423056
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaa 87  Q
    |||| ||||||| |||||| ||| ||  ||| ||||||||||||| |||||||||||||||| ||||||| ||||    
T  45423130 aatacatatagatgatatgaaaagtttcgtaccattccgaataagtctcgatttattttgatatttcgaccgaaa 45423056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 25484267 - 25484356
Alignment:
Q  52 aataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctctgccagaaactgcactcaagtgcagctgag 141  Q
    |||||| |||||||||||||||||||||||| |||| |  ||||||  ||||||||| | ||| || |||| |||| | |||||||||||    
T  25484267 aataagtctcgatttattttgatttttcgaccgaaacgaacaaaataacaattgatgatttgctaggaactacacttaggtgcagctgag 25484356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 5865867 - 5865909
Alignment:
Q  45 cattccgaataagcctcgatttattttgatttttcgactgaaa 87  Q
    |||||||| |||||||| |||||||||||||||||||| ||||    
T  5865867 cattccgactaagcctcaatttattttgatttttcgaccgaaa 5865909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 47356470 - 47356561
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattga 106  Q
    |||||||||||  ||| |||||| ||  ||| |||||||| |||| |||||||  |||| |||||||||| |||||| ||||||| ||||||||    
T  47356470 aatatatataggtgatgtgcaaagtttcgtaacattccgattaagtctcgatt--tttttatttttcgaccgaaatgcgcaaaatcgcaattga 47356561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 47356651 - 47356693
Alignment:
Q  40 tgtatcattccgaataagcctcgatttattttgatttttcgac 82  Q
    |||| |||| ||| |||||||||||||||||||||||||||||    
T  47356651 tgtagcatttcgactaagcctcgatttattttgatttttcgac 47356693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 24774219 - 24774337
Alignment:
Q  25 ggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctctgccagaaactgc 124  Q
    |||| |||||| ||||||| ||||||||||| |||||||||||||||||||| ||||| |||| | |||||||   ||||||||||||| | ||||||||    
T  24774219 ggatctgcaaagttctgtaacattccgaatatgcctcgatttattttgatttatcgaccgaaacgcgcaaaatcataattgatgctctgtctgaaactgc 24774318  T
Q  125 actcaagtgcagctgagcc 143  Q
    ||| || ||||||||||||    
T  24774319 acttaaatgcagctgagcc 24774337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 40440046 - 40440004
Alignment:
Q  45 cattccgaataagcctcgatttattttgatttttcgactgaaa 87  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  40440046 cattccgaataagcgtcgatttattttgatttttcgactgaaa 40440004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 44329372 - 44329313
Alignment:
Q  45 cattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    |||| ||| |||| |||||||||||||||||||||||| ||| | |||||||||||||||    
T  44329372 catttcgactaagtctcgatttattttgatttttcgaccgaattatgcaaaattgcaatt 44329313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 2286430 - 2286389
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  2286430 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 2286389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 2957670 - 2957711
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  2957670 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 2957711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 6403327 - 6403368
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  6403327 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 6403368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 17444564 - 17444605
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  17444564 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 17444605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 35963333 - 35963292
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  35963333 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 35963292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 41251157 - 41251198
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  41251157 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 41251198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 42442627 - 42442586
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  42442627 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 42442586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 42036388 - 42036486
Alignment:
Q  45 cattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctctgccagaaactgcactcaagtgcagctgagcc 143  Q
    ||||||||||||| || || |||||||||||||| || ||||||| |||||||||||||||||| |||| |||  |||||||| || ||||||||||||    
T  42036388 cattccgaataagtcttgacttattttgattttttgattgaaatgcgcaaaattgcaattgatgttctgtcaggtactgcacttaaatgcagctgagcc 42036486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 34765150 - 34765056
Alignment:
Q  38 tctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctctgccagaaactgcactcaagtg 133  Q
    |||||| ||||| |||||||| | |||| ||||||||||||||||||||| ||||||||| ||||| |||||||||| || || |||||| |||||    
T  34765150 tctgtaacattctgaataagcattgatt-attttgatttttcgactgaaacgtgcaaaatcgcaatcgatgctctgctagtaagtgcacttaagtg 34765056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 28109423 - 28109508
Alignment:
Q  52 aataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctctgccagaaactgcactcaagtgcagc 137  Q
    ||||||| ||||||||||||||||||||||| ||||   | |||||  |||||||| |||||||||||| |||||| |||||||||    
T  28109423 aataagcttcgatttattttgatttttcgaccgaaacacgtaaaatcacaattgattctctgccagaaattgcacttaagtgcagc 28109508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 30471280 - 30471369
Alignment:
Q  46 attccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctctgccagaaactgcactcaagtgca 135  Q
    ||||| ||||||| || |||||||||||||||||||| |||| | | |||||  |||||||| |||| |||||||||||||| |||||||    
T  30471280 attccaaataagcttcaatttattttgatttttcgaccgaaacgcgtaaaatcacaattgattctcttccagaaactgcacttaagtgca 30471369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 18966677 - 18966741
Alignment:
Q  40 tgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    |||| |||||||| |||| |||||||||||||||||||||||| |||  ||||||||| ||||||    
T  18966677 tgtagcattccgactaagtctcgatttattttgatttttcgaccgaaccgtgcaaaatcgcaatt 18966741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 28108772 - 28108831
Alignment:
Q  45 cattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    |||||||| |||| ||| ||||||||||||||||| || |||  ||||||||||||||||    
T  28108772 cattccgattaagtctcaatttattttgatttttcaaccgaaccgtgcaaaattgcaatt 28108831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 30463536 - 30463406
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctct 112  Q
    |||| ||||||||||| || ||  ||| ||| |||||| |||||| |||||||| |||   ||||||||| |||| | ||| |||  |||||||||||||    
T  30463536 aatacatatagaggatgtggaatgttccgtaacattccaaataagtctcgatttttttatttttttcgaccgaaacgcgcataatcacaattgatgctct 30463437  T
Q  113 gccagaaactgcactcaagtgcagctgagcc 143  Q
    || || ||| | ||| |||||||| ||||||    
T  30463436 gctaggaaccgaacttaagtgcagatgagcc 30463406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 10036550 - 10036509
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  10036550 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 10036509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 16333425 - 16333466
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  16333425 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 16333466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 17644946 - 17644905
Alignment:
Q  46 attccgaataagcctcgatttattttgatttttcgactgaaa 87  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  17644946 attctgaataagtttcgatttattttgatttttcgactgaaa 17644905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 21098401 - 21098438
Alignment:
Q  60 tcgatttattttgatttttcgactgaaatgtgcaaaat 97  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  21098401 tcgatttattttgatttttcgaccgaaatgcgcaaaat 21098438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 26282841 - 26282882
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  26282841 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 26282882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 28108737 - 28108684
Alignment:
Q  18 atatagaggatatgcaaaattctgtatcattccgaataagcctcgatttatttt 71  Q
    |||||||||||||||||  ||||||| ||||||||||||| ||| |||| ||||    
T  28108737 atatagaggatatgcaatgttctgtaccattccgaataagtctcaatttttttt 28108684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 31064610 - 31064545
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgattttt 78  Q
    |||| |||||| || | |||||| || |||| |||||||||||| | |||||||||||||||||||    
T  31064610 aatacatatagtgggtctgcaaagttttgtagcattccgaataaacatcgatttattttgattttt 31064545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 36293144 - 36293185
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  36293144 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 36293185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 8213967 - 8213935
Alignment:
Q  54 taagcctcgatttattttgatttttcgactgaa 86  Q
    |||| ||||||||||||||||||||||||||||    
T  8213967 taagtctcgatttattttgatttttcgactgaa 8213935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 16155639 - 16155603
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattg 99  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  16155639 atttattttgatttttcaactgaaacgtgcaaaattg 16155603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 22964913 - 22964829
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaat 97  Q
    |||||||||||||| | || ||| ||  |||| |||| ||||||   ||||||||||||||||||||||| |||| ||| |||||    
T  22964913 aatatatatagagggtctgtaaagttacgtataattctgaataattttcgatttattttgatttttcgaccgaaacgtgtaaaat 22964829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 24535786 - 24535667
Alignment:
Q  18 atatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctctgccag 117  Q
    ||||||||||| || ||| ||  ||| |||||||||||| |||  ||||||||| ||||||||||||||| | | |||||  |||||||| |||||||||    
T  24535786 atatagaggatctgtaaagtttcgtagcattccgaataaacctttatttattttcatttttcgactgaaacgcgtaaaatcacaattgattctctgccag 24535687  T
Q  118 aaactgcactcaagtgcagc 137  Q
     || |||||| |||||||||    
T  24535686 gaattgcacttaagtgcagc 24535667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 24536848 - 24536922
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaa 87  Q
    |||| |||||||||||  ||||||||  ||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  24536848 aatacatatagaggattcgcaaaatttcgtagcattccaaataagcctcgatttatattgatttttcgactgaaa 24536922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 28991709 - 28991580
Alignment:
Q  20 atagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctctgccagaa 119  Q
    ||||||||| |||||| |   ||| |||||||||||||||||||||||||||||||||||| || |||   |||||||  |||||||| || |||| | |    
T  28991709 atagaggatctgcaaagtgtcgtagcattccgaataagcctcgatttattttgatttttcgtctaaaacacgcaaaatcacaattgatcctttgcccgga 28991610  T
Q  120 actgcactcaagtgcagctgagccgactgc 149  Q
    ||| |||| ||||| | ||||||| |||||    
T  28991609 actacacttaagtgtacctgagccaactgc 28991580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 28427152 - 28427030
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctct 112  Q
    |||| ||||||||||| |  ||| || |||| |||||| |||||||||||||||||||||| |||||||||||| || | |||||  |||||||  ||||    
T  28427152 aatacatatagaggatctataaagttttgtagcattccaaataagcctcgatttattttgagttttcgactgaagtgcgtaaaatcacaattgactctct 28427053  T
Q  113 gccagaaactgcactcaagtgca 135  Q
     |||| || | |||| |||||||    
T  28427052 accaggaatttcacttaagtgca 28427030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 28992020 - 28992070
Alignment:
Q  54 taagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||| ||||||    
T  28992020 taagcctcgatttattttgatttttcgaccgaaaagtgtaaaatcgcaatt 28992070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 15838916 - 15838875
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  15838916 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 15838875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 21543271 - 21543332
Alignment:
Q  45 cattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattga 106  Q
    ||||||||||||| |||||||| |||| |||||||| |  ||| | ||||||||||||||||    
T  21543271 cattccgaataagtctcgattttttttaatttttcgtccaaaacgcgcaaaattgcaattga 21543332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 29727908 - 29727949
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  29727908 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 29727949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 39915158 - 39915117
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  39915158 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 39915117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 127420 - 127513
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattga 106  Q
    |||| ||||||| ||| || ||| || |||| ||||||||||||| |||||||||||||  ||||||||| |||||| ||||||| ||||||||    
T  127420 aatacatatagatgatgtgaaaagttttgtaacattccgaataagtctcgatttattttattttttcgaccgaaatgcgcaaaatcgcaattga 127513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 128227 - 128349
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctct 112  Q
    |||| ||||||||||| |  ||| || |||| |||||| |||||||||||||||||||||| |||||||||||| || | |||||  |||||||  ||||    
T  128227 aatacatatagaggatctataaagttttgtagcattccaaataagcctcgatttattttgagttttcgactgaagtgcgtaaaatcacaattgactctct 128326  T
Q  113 gccagaaactgcactcaagtgca 135  Q
     |||| || | |||| |||||||    
T  128327 accaggaatttcacttaagtgca 128349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 47448 - 47578
Alignment:
Q  18 atatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaattgatgctctgccag 117  Q
    ||||||||||| || ||| ||  ||| |||||||||||| |||| |||||||||||||||| |||  ||| |  ||||||   |||| |||||||| |||    
T  47448 atatagaggatctgtaaagtttcgtagcattccgaataatcctccatttattttgattttttgaccaaaacgcacaaaatcttaattaatgctctgacag 47547  T
Q  118 aaactgcactcaagtgcagctgagccgactg 148  Q
     ||||||||  ||||||||||||||| ||||    
T  47548 gaactgcacataagtgcagctgagccaactg 47578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 47131 - 47087
Alignment:
Q  45 cattccgaataagcctcgatttattttgatttttcgactgaaatg 89  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||||    
T  47131 cattccgaataagcctcaatttattttgatttttagacagaaatg 47087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 11873 - 11824
Alignment:
Q  55 aagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||||||||||||||||||| | ||||||| ||||||    
T  11873 aagcctcgatttattttgatttttcgactgaaacgcgcaaaatcgcaatt 11824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 19443 - 19394
Alignment:
Q  55 aagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||||||||||||||||||| | ||||||| ||||||    
T  19443 aagcctcgatttattttgatttttcgactgaaacgcgcaaaatcgcaatt 19394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 33269 - 33318
Alignment:
Q  55 aagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||||||||||||||||||| | ||||||| ||||||    
T  33269 aagcctcgatttattttgatttttcgactgaaacgcgcaaaatcgcaatt 33318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 38269 - 38220
Alignment:
Q  55 aagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||||||||||||||||||| | ||||||| ||||||    
T  38269 aagcctcgatttattttgatttttcgactgaaacgcgcaaaatcgcaatt 38220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 37217 - 37180
Alignment:
Q  60 tcgatttattttgatttttcgactgaaatgtgcaaaat 97  Q
    |||||||||||||||||||||||||||| | |||||||    
T  37217 tcgatttattttgatttttcgactgaaacgcgcaaaat 37180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 4811622 - 4811570
Alignment:
Q  52 aataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||||||||||||||||||||||   |||||||| |||||    
T  4811622 aataagcctcgatttattttgatttttcgactgaaacccgcaaaattacaatt 4811570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 314459 - 314501
Alignment:
Q  45 cattccgaataagcctcgatttattttgatttttcgactgaaa 87  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  314459 cattcctaataagcctcgatttattttgatttttcgaccgaaa 314501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 46508013 - 46507948
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgattttt 78  Q
    ||||||||||||||||||| ||| ||   || ||||||||||||| ||| ||||||||||||||||    
T  46508013 aatatatatagaggatatgtaaagtttcatagcattccgaataagtctcaatttattttgattttt 46507948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 45266337 - 45266246
Alignment:
Q  13 aatatatatagaggatatgcaaaattctgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    |||| ||||||| ||| |||||| ||  ||| |||| ||| |||| |||||||||||||||||||||||| |||   |||||||| ||||||    
T  45266337 aatacatatagatgatgtgcaaagtttcgtagcatttcgactaagtctcgatttattttgatttttcgaccgaaccatgcaaaatcgcaatt 45266246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 54922230 - 54922171
Alignment:
Q  45 cattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    |||| ||| |||| ||||||||||||||||||||||||||||   |||||||| ||||||    
T  54922230 catttcgactaagtctcgatttattttgatttttcgactgaaccatgcaaaatcgcaatt 54922171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 37526303 - 37526341
Alignment:
Q  49 ccgaataagcctcgatttattttgatttttcgactgaaa 87  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  37526303 ccgaataagccttgatttattttgatttttcgaccgaaa 37526341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 6268949 - 6268990
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  6268949 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 6268990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 19390790 - 19390749
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  19390790 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 19390749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 22967967 - 22968008
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  22967967 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 22968008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 34083645 - 34083686
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  34083645 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 34083686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 39772434 - 39772393
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  39772434 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 39772393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 40081265 - 40081306
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  40081265 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 40081306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 22019264 - 22019205
Alignment:
Q  45 cattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    |||| ||| |||| |||||||||||||||||||||||| ||| | |||||||||||||||    
T  22019264 catttcgactaagtctcgatttattttgatttttcgaccgaattatgcaaaattgcaatt 22019205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 399261 - 399220
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  399261 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 399220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 34948307 - 34948348
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  34948307 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 34948348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 4222495 - 4222431
Alignment:
Q  40 tgtatcattccgaataagcctcgatttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    |||| |||| ||| |||| |||||||||||||||||||||||| |||   |||||||| ||||||    
T  4222495 tgtaccatttcgactaagtctcgatttattttgatttttcgaccgaaccatgcaaaatcgcaatt 4222431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 12621 - 12579
Alignment:
Q  60 tcgatttattttgatttttcgactgaaatgtgcaaaattgcaa 102  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||    
T  12621 tcgatttattttgatttttcgaccgaaacgtgcaaaatcgcaa 12579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 71914 - 71956
Alignment:
Q  60 tcgatttattttgatttttcgactgaaatgtgcaaaattgcaa 102  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||    
T  71914 tcgatttattttgatttttcgaccgaaacgtgcaaaatcgcaa 71956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 18202 - 18161
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  18202 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 18161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 479980 - 480021
Alignment:
Q  63 atttattttgatttttcgactgaaatgtgcaaaattgcaatt 104  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  479980 atttattttgatttttcaactgaaacgtgcaaaattgaaatt 480021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University