View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9921_low_2 (Length: 210)
Name: NF9921_low_2
Description: NF9921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9921_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 45520785 - 45520608
Alignment:
| Q |
19 |
gaaaacaagacaaaaatttgtaccagctgtacacatacagaaatcacaccactaatttccattttttctaactaacnnnnnnnnnnnnnnnggaccttaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
45520785 |
gaaaacaagacaaaaatttgtaccagctatacacatacagaaatcacaccactaatttccattttttctaactaactttttttgtttttttg-accttaa |
45520687 |
T |
|
| Q |
119 |
ctaatcagctaccaccgcatcatctcccatgttcacatccccgccgccgccaactacaaaaccatcaccaccaccacca |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45520686 |
ctaatcagctgccaccgcatcatctcccatgttcatatccccgccgccgccaactacaaaaccatcaccaccaccacca |
45520608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 19832560 - 19832737
Alignment:
| Q |
19 |
gaaaacaagacaaaaatttgtaccagctgtacacatacagaaatcacaccactaatttccattttttctaactaacnnnnnnnnnnnnnnnggaccttaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
19832560 |
gaaaacaagacaaaaatttgtaccagctatacacatacagaaatcacaccactaatttccattttttctaactaactttttttgtttttttg-accttaa |
19832658 |
T |
|
| Q |
119 |
ctaatcagctaccaccgcatcatctcccatgttcacatccccgccgccgccaactacaaaaccatcaccaccaccacca |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19832659 |
ctaatcagctgccaccgcatcatctcccatgttcatatccccgccgccgccaactacaaaaccatcaccaccaccacca |
19832737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 19634186 - 19634238
Alignment:
| Q |
19 |
gaaaacaagacaaaaatttgtaccagctgtacacatacagaaatcacaccact |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19634186 |
gaaaacaagacaaaaatttgtaccagctgtacacatacagaaatcacaccact |
19634238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University