View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9922_12 (Length: 312)

Name: NF9922_12
Description: NF9922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9922_12
NF9922_12
[»] chr4 (7 HSPs)
chr4 (158-281)||(46428187-46428310)
chr4 (135-281)||(46015802-46015948)
chr4 (161-279)||(46027873-46027991)
chr4 (40-177)||(46307040-46307180)
chr4 (86-192)||(46028273-46028379)
chr4 (175-268)||(46021197-46021294)
chr4 (166-281)||(46303853-46303970)
[»] chr1 (4 HSPs)
chr1 (145-288)||(3802249-3802396)
chr1 (180-289)||(3804120-3804229)
chr1 (55-214)||(3803594-3803753)
chr1 (197-288)||(3801764-3801857)
[»] chr8 (3 HSPs)
chr8 (180-263)||(4382423-4382506)
chr8 (135-195)||(4525410-4525470)
chr8 (247-288)||(4522976-4523017)
[»] chr5 (1 HSPs)
chr5 (190-228)||(8186041-8186079)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 158 - 281
Target Start/End: Original strand, 46428187 - 46428310
Alignment:
Q  158 aaaaggagaaagtaagttttactcaatgatgtaatgttttattaatatgttctttgcagttaaattaatttgtgttaacatgcacttctttcatatgtta 257  Q
    |||||||||||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||| ||||||||| ||||| | ||  |||||    
T  46428187 aaaaggagaaagtaagttttactcaatgctgtaatggtatattgatatgttctttgcagttaaattaatttgggttaacatgtacttcgtccaactgtta 46428286  T
Q  258 tgatttagattttaactttaaaac 281  Q
    ||||||| ||||| ||||||||||    
T  46428287 tgatttacattttgactttaaaac 46428310  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 135 - 281
Target Start/End: Original strand, 46015802 - 46015948
Alignment:
Q  135 aaaccgtttcttgctaagaagacaaaaggagaaagtaagttttactcaatgatgtaatgttttattaatatgttctttgcagttaaattaatttgtgtta 234  Q
    |||| |||||||||||| || | |||| ||| ||||||||||||||||||| ||||||| | |||| |||||||||||||||||| ||||||||| ||||    
T  46015802 aaacagtttcttgctaataataaaaaaagagcaagtaagttttactcaatgctgtaatgatgtattgatatgttctttgcagttatattaatttgggtta 46015901  T
Q  235 acatgcacttctttcatatgttatgatttagattttaactttaaaac 281  Q
    ||||| ||||| | ||| |||||||||||| || || ||||||||||    
T  46015902 acatgtacttcgtccatctgttatgatttacatcttgactttaaaac 46015948  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 161 - 279
Target Start/End: Original strand, 46027873 - 46027991
Alignment:
Q  161 aggagaaagtaagttttactcaatgatgtaatgttttattaatatgttctttgcagttaaattaatttgtgttaacatgcacttctttcatatgttatga 260  Q
    ||||||||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||  ||||||||| ||||| | ||| ||||||||    
T  46027873 aggagaaagtaagttttactcaatgctgtaatggtgtattgatatgttctttgcagttaaattaatttaggttaacatgtacttcgtccatctgttatga 46027972  T
Q  261 tttagattttaactttaaa 279  Q
    |||| ||||| ||||||||    
T  46027973 tttaaattttgactttaaa 46027991  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 177
Target Start/End: Complemental strand, 46307180 - 46307040
Alignment:
Q  40 ttcttatttgattagaacattcaatagaatttgctacaaagcatccctcaaaaaacaacaataacgaagttgctaagaagcattgtatgacga---tcaa 136  Q
    |||| ||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||| || |||||||||||||||| | || ||| ||   ||||    
T  46307180 ttctaatttgatcagaacattcaacagaatttgctacgatgcatccctcaaaaaacaacaaaaatgaagttgctaagaagcctcgtttgaagattgtcaa 46307081  T
Q  137 accgtttcttgctaagaagacaaaaggagaaagtaagtttt 177  Q
    |  ||| ||||||||| ||| |||||||| |||||||||||    
T  46307080 attgttgcttgctaagcagaaaaaaggaggaagtaagtttt 46307040  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 46028273 - 46028379
Alignment:
Q  86 ctcaaaaaacaacaataacgaagttgctaagaagcattgtatgacgatcaaaccgtttcttgctaagaagacaaaaggagaaagtaagttttactcaatg 185  Q
    ||||||||||| ||| || ||||||||| |||||| || | ||| | ||||| ||| |||||||||| ||  ||||||||||||||||||||||||||||    
T  46028273 ctcaaaaaacagcaaaaatgaagttgctgagaagccttatttgaagttcaaatcgtctcttgctaagcaggaaaaaggagaaagtaagttttactcaatg 46028372  T
Q  186 atgtaat 192  Q
     ||||||    
T  46028373 ctgtaat 46028379  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 46021197 - 46021294
Alignment:
Q  175 tttactcaatgatgtaatgttttattaat----atgttctttgcagttaaattaatttgtgttaacatgcacttctttcatatgttatgatttagatt 268  Q
    ||||||||||| ||||||||| |||||||    || || |||||||||||||||||||| ||||||||||||| | | ||| ||||||||||||||||    
T  46021197 tttactcaatgctgtaatgttgtattaattaatatattatttgcagttaaattaatttgagttaacatgcactccatccatctgttatgatttagatt 46021294  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 281
Target Start/End: Complemental strand, 46303970 - 46303853
Alignment:
Q  166 aaagtaagttttact-caatgatgtaatgttttattaatatgttctttgcagttaaattaatttgtg-ttaacatgcacttctttcatatgttatgattt 263  Q
    ||||||||||||||| ||||| ||| ||||  |||||| ||||||||||| || ||||||  ||| | |||||||||| ||| | ||| |||||||||||    
T  46303970 aaagtaagttttacttcaatgttgtgatgtcgtattaacatgttctttgctgtgaaattagcttggggttaacatgcatttcatccatctgttatgattt 46303871  T
Q  264 agattttaactttaaaac 281  Q
    ||||||| ||||||||||    
T  46303870 agattttgactttaaaac 46303853  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 288
Target Start/End: Complemental strand, 3802396 - 3802249
Alignment:
Q  145 ttgctaagaagacaaaaggagaaagtaagttttactcaatgatgtaatgtt------ttattaatatgttctttgcagttaaattaatttgtgttaacat 238  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||| |       || | ||||||||  |||| ||||||||||||||   ||| ||    
T  3802396 ttgctaagaagagaaaaggagaaagtaagttttactcaatgctgtaatttgcacttcttgtcaatatgtt--ttgcggttaaattaatttggcgtaatat 3802299  T
Q  239 gcacttctttcatatgttatgatttagattttaactttaaaaccttgtga 288  Q
    ||| |||||||||||||||||||||||||||  ||||||||||| |||||    
T  3802298 gcatttctttcatatgttatgatttagatttcgactttaaaaccatgtga 3802249  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 3804229 - 3804120
Alignment:
Q  180 tcaatgatgtaatgttttattaatatgttctttgcagttaaattaatttgtgttaacatgcacttctttcatatgttatgatttagattttaactttaaa 279  Q
    |||||| ||| ||||| ||||||||||||||||||  | || ||| |||| ||||||||||||||| | ||| |||||||||||| ||||| ||||||||    
T  3804229 tcaatgttgtgatgttgtattaatatgttctttgctatgaagttagtttgggttaacatgcacttcatccatctgttatgatttaaattttgactttaaa 3804130  T
Q  280 accttgtgat 289  Q
    ||| ||||||    
T  3804129 accatgtgat 3804120  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 214
Target Start/End: Complemental strand, 3803753 - 3803594
Alignment:
Q  55 aacattcaatagaatttgctacaaagcatccctcaaaaaacaacaataacgaagttgctaagaagcattgtatgacgatcaaaccgtttcttgctaagaa 154  Q
    |||||| || |||||||||||  |||  || ||||||||||||||| || |||||||||||| ||| |  | ||||| | ||| | |   |||||||||     
T  3803753 aacattaaacagaatttgctatgaagtgtcgctcaaaaaacaacaaaaatgaagttgctaaggagcctcatttgacgttaaaatcatcaattgctaagat 3803654  T
Q  155 gacaaaaggagaaagtaagttttactcaatgatgtaatgttttattaatatgttctttgc 214  Q
    || ||||||||||||||||||||||||||||  |||||||| || || ||||||||||||    
T  3803653 gaaaaaaggagaaagtaagttttactcaatgccgtaatgttgtaatactatgttctttgc 3803594  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 3801857 - 3801764
Alignment:
Q  197 tattaatatgttctttgcagttaaattaatttgtgtt--aacatgcacttctttcatatgttatgatttagattttaactttaaaaccttgtga 288  Q
    |||||||| |||||||||||| |||||| |||| | |  |||||||| ||| | ||| |||||||||||||||||| ||||||||||| |||||    
T  3801857 tattaatacgttctttgcagtgaaattagtttggggttaaacatgcatttcatccatctgttatgatttagattttgactttaaaaccatgtga 3801764  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 4382423 - 4382506
Alignment:
Q  180 tcaatgatgtaatgttttattaatatgttctttgcagttaaattaatttgtgttaacatgcacttctttcatatgttatgattt 263  Q
    ||||||||||||| ||  ||||||||||| | ||||||  |||||||||| ||||||||||||||  ||||| |||||| ||||    
T  4382423 tcaatgatgtaatcttgcattaatatgttttatgcagtcgaattaatttgggttaacatgcactttgttcatttgttattattt 4382506  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 4525470 - 4525410
Alignment:
Q  135 aaaccgtttcttgctaagaagacaaaaggagaaagtaagttttactcaatgatgtaatgtt 195  Q
    |||||||||||| ||||||||  ||||| | |||||||||||||||||||| | |||||||    
T  4525470 aaaccgtttcttcctaagaagcaaaaagtacaaagtaagttttactcaatgctttaatgtt 4525410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 4523017 - 4522976
Alignment:
Q  247 ttcatatgttatgatttagattttaactttaaaaccttgtga 288  Q
    ||||| |||||||||||||||||| ||||||||||| |||||    
T  4523017 ttcatctgttatgatttagattttgactttaaaaccatgtga 4522976  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 8186041 - 8186079
Alignment:
Q  190 aatgttttattaatatgttctttgcagttaaattaattt 228  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  8186041 aatgttgtattaatatgttctttgcagttgaattaattt 8186079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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