View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9922_2 (Length: 783)
Name: NF9922_2
Description: NF9922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9922_2 |
 | |
|
| [»] scaffold0891 (2 HSPs) |
| | |
|
| [»] scaffold2086 (1 HSPs) |
| | |
|
| [»] scaffold1996 (2 HSPs) |
| | |
|
| [»] scaffold1335 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 430 - 763
Target Start/End: Original strand, 35865953 - 35866286
Alignment:
| Q |
430 |
acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac |
529 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35865953 |
acatcatagttaatttccatccctattttccaagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcacac |
35866052 |
T |
|
| Q |
530 |
cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagt |
629 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35866053 |
cataggaaatagtttcaagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagt |
35866152 |
T |
|
| Q |
630 |
tatgtatcctctatccttaacttcatctagaaactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggt |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35866153 |
tatgtatcctctatccttaacttcatctagaaactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggt |
35866252 |
T |
|
| Q |
730 |
aatttgctatttgctattccccaagcaaattctt |
763 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
35866253 |
aatttgctatttgctattccccaagcaaattctt |
35866286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 430 - 763
Target Start/End: Original strand, 35848282 - 35848615
Alignment:
| Q |
430 |
acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac |
529 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
35848282 |
acatcatagttaatttccatcccaattttccaagtgttgcataaatacctacaatttgtttgttgctcaacaaagaaaggccaacaaatagtaggcacac |
35848381 |
T |
|
| Q |
530 |
cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagt |
629 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35848382 |
cataggaaatagtttcaagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagt |
35848481 |
T |
|
| Q |
630 |
tatgtatcctctatccttaacttcatctagaaactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggt |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35848482 |
tatgtatcctctatccttaacttcatctagaaactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggt |
35848581 |
T |
|
| Q |
730 |
aatttgctatttgctattccccaagcaaattctt |
763 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
35848582 |
aatttgctatttgctattccccaagcaaattctt |
35848615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 35865544 - 35865857
Alignment:
| Q |
20 |
acatcatcaaggataaatgaagcaacattagtcacaatcgtccttgtcaacaagaaccacgatattttcatgtccctacagttgaaagattatgaagnnn |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35865544 |
acataatcaaggataaatgaagcaacattagtcacaatcgtccttgtcaacaagaaccacgatattttcatgtccctacagttgaaagattatgaagaaa |
35865643 |
T |
|
| Q |
120 |
nnnnngccacaaactctctctgcaccaatgcaagataataccaaattcagaatagtcaacatgacaatgattgatgatgatcaaatagaaatgttttaac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35865644 |
aaaa-gccacaaactctctctgcaccaatgcaagataacaccaaattcagaatagtcaacatgacaatgattgatgatgatcaaatagaaatgttttaac |
35865742 |
T |
|
| Q |
220 |
taaaagtaatagaccgattataatataactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35865743 |
taaaagtaatagaccgattataatataactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattaatgtatgatgatcctcccaaat |
35865842 |
T |
|
| Q |
320 |
tagtagcatctgtag |
334 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
35865843 |
tagtagcatctgtag |
35865857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 430 - 763
Target Start/End: Original strand, 35774501 - 35774834
Alignment:
| Q |
430 |
acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac |
529 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35774501 |
acatcatggttaatttccatccctattttccaagacttgcataaataccaacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcacac |
35774600 |
T |
|
| Q |
530 |
cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagt |
629 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35774601 |
cataggaaatagtttcaagtgtagaattccaaccacaatgagttaagaatcccccaattgatggatgagaaagcacttgatcttgatagcaccaactagt |
35774700 |
T |
|
| Q |
630 |
tatgtatcctctatccttaacttcatctagaaactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggt |
729 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||| ||| |
|
|
| T |
35774701 |
tatgtatcctctatccttaacctcatctagaaaatcttgtggcaaagttgaagtctcttcacccattgctacatctggtctcaatatccataaaaaaggt |
35774800 |
T |
|
| Q |
730 |
aatttgctatttgctattccccaagcaaattctt |
763 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
35774801 |
aatttactatttgctattccccaagcaaattctt |
35774834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 430 - 763
Target Start/End: Original strand, 35754378 - 35754711
Alignment:
| Q |
430 |
acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac |
529 |
Q |
| |
|
||||||| |||||||||||| |||| ||||||||||| ||| |||||| | |||||||||||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
35754378 |
acatcattgttaatttccattcctactttccaagtgtcgcataaatacttgcaatttgtttgttgctcagcaaagaagggccaacaaatagtaggaacac |
35754477 |
T |
|
| Q |
530 |
cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagt |
629 |
Q |
| |
|
| ||||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
35754478 |
ctgaagaaatggtttcaattgtagaattccaaccacaatgagttagaaaaaccccaactgatggatgagcaagcacttggtcttgcatgcaccaactagt |
35754577 |
T |
|
| Q |
630 |
tatgtatcctctatccttaacttcatctagaaactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggt |
729 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||| |||| | ||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
35754578 |
tatgtatcctctatccttaacttcatctagaaaatcttgtggcaaagttgaaatttcttcacccattactacatctggtctcattatccataaaaatggt |
35754677 |
T |
|
| Q |
730 |
aatttgctatttgctattccccaagcaaattctt |
763 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
35754678 |
aatttactatttgctattccccaagcaaattctt |
35754711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 474 - 761
Target Start/End: Original strand, 35735583 - 35735867
Alignment:
| Q |
474 |
atacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagtttcaagtgtagaattccaaccacaatgagtt |
573 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||| | ||||||| | ||||||| ||||||||||||||||||||| |
|
|
| T |
35735583 |
atacctacaatttgtttgttgctcagcaaagaaaggccaaccaatcataggcttaccttcagaaatactctcaagtgatgaattccaaccacaatgagtt |
35735682 |
T |
|
| Q |
574 |
aggaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagttatgtatcctctatccttaacttcatctagaaactcttgaggca |
673 |
Q |
| |
|
| ||| |||||||||||||||||| ||| |||| | |||| ||||| | |||| || |||||||||||||||||||||| ||| ||||| | || |
|
|
| T |
35735683 |
aaaaataccccaactgatggatgagcaagtacttcactttgaggacaccatgttattatataacctctatccttaacttcatctaaaaattcttgtgaca |
35735782 |
T |
|
| Q |
674 |
aagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggtaatttgctatttgctattccccaagcaaattc |
761 |
Q |
| |
|
| | || | | || ||| |||| | ||||||||| | ||||| |||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
35735783 |
atg--gacgac-attttccctttaccaaatctggtctatttatccataaaaatggtaatttactatttgctaaaccccaagcaaattc |
35735867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 35848087 - 35848186
Alignment:
| Q |
235 |
gattataatataactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagcatctgtag |
334 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35848087 |
gattataatagaactcaaatggccttgtgatgaagaacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtag |
35848186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 35774318 - 35774397
Alignment:
| Q |
247 |
actcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagc |
326 |
Q |
| |
|
||||||||||| || |||||||||| |||||| ||||| || | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35774318 |
actcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatgatgatccacccaaattagtagc |
35774397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 229 - 319
Target Start/End: Original strand, 35754177 - 35754267
Alignment:
| Q |
229 |
tagaccgattataatataactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaat |
319 |
Q |
| |
|
|||||| || |||||| ||||||| |||||||||| |||||| |||| ||||||| |||| ||||||| |||||||||||||||| |||| |
|
|
| T |
35754177 |
tagaccaataataataagactcaaaaagcattgtgacgaagaacctctgtaattaacttatggaaattagtgtatgatgatcctccaaaat |
35754267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 430 - 763
Target Start/End: Complemental strand, 3590 - 3257
Alignment:
| Q |
430 |
acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac |
529 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3590 |
acatcatggttaatttccatccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac |
3491 |
T |
|
| Q |
530 |
cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagt |
629 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
3490 |
cataagaaatagtttcaagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagcaagcacttcgtcttgggagcaccaactagt |
3391 |
T |
|
| Q |
630 |
tatgtatcctctatccttaacttcatctagaaactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggt |
729 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||| ||| |
|
|
| T |
3390 |
tatgtatcctttatccttaacttcatctagaaactcttgtggcaaagttgaagtctcttcacccattgctacatctggtctcaatatccataaaaaaggt |
3291 |
T |
|
| Q |
730 |
aatttgctatttgctattccccaagcaaattctt |
763 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
3290 |
aatttactatttgctattccccaagcaaattctt |
3257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 246 - 325
Target Start/End: Complemental strand, 3774 - 3695
Alignment:
| Q |
246 |
aactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtag |
325 |
Q |
| |
|
||||||||||||||| |||||||||| ||| |||| || |||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
3774 |
aactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtag |
3695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 430 - 763
Target Start/End: Complemental strand, 453 - 120
Alignment:
| Q |
430 |
acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac |
529 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
453 |
acatcatggttaatttccatccctattttccaagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcatac |
354 |
T |
|
| Q |
530 |
cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagt |
629 |
Q |
| |
|
|| |||| |||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
353 |
cagaagatatagcttcaagtgtagaattccaaccacaatgagttaggaaccctccaaccgatggatgagcaagcacttgatcttgaaagcaccaactagt |
254 |
T |
|
| Q |
630 |
tatgtatcctctatccttaacttcatctagaaactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggt |
729 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
253 |
tatgtatcctctatcttttacctcatctagaaactcttgtggcaaagatgaagtttccacacccattactacatctggtctcattatccataaaaatggc |
154 |
T |
|
| Q |
730 |
aatttgctatttgctattccccaagcaaattctt |
763 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
153 |
aatttactatttgctattccccaagcaaattctt |
120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 430 - 763
Target Start/End: Complemental strand, 453 - 120
Alignment:
| Q |
430 |
acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacac |
529 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
453 |
acatcatggttaatttccatccctattttccaagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcatac |
354 |
T |
|
| Q |
530 |
cataagaaatagtttcaagtgtagaattccaaccacaatgagttaggaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagt |
629 |
Q |
| |
|
|| |||| |||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
353 |
cagaagatatagcttcaagtgtagaattccaaccacaatgagttaggaaccctccaaccgatggatgagcaagcacttgatcttgaaagcaccaactagt |
254 |
T |
|
| Q |
630 |
tatgtatcctctatccttaacttcatctagaaactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggt |
729 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
253 |
tatgtatcctctatcttttacctcatctagaaactcttgtggcaaagatgaagtttccacacccattactacatctggtctcattatccataaaaatggc |
154 |
T |
|
| Q |
730 |
aatttgctatttgctattccccaagcaaattctt |
763 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
153 |
aatttactatttgctattccccaagcaaattctt |
120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 430 - 493
Target Start/End: Complemental strand, 1146 - 1083
Alignment:
| Q |
430 |
acatcatagttaatttccatacctattttccaagtgttgcacaaatacctacaatttgtttgtt |
493 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1146 |
acatcatggttaatttccatcccaattttccaagtgttgcataaatacctacaatttgtttgtt |
1083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 176 - 77
Alignment:
| Q |
235 |
gattataatataactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagcatctgtag |
334 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
176 |
gattataatagaactcaaatggccttgtgatgaagaacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtag |
77 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 515
Target Start/End: Original strand, 26672102 - 26672139
Alignment:
| Q |
478 |
ctacaatttgtttgttgttcagcaaagaaaggccaaca |
515 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26672102 |
ctacaattagtttgttgttcagcaaaaaaaggccaaca |
26672139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 515
Target Start/End: Original strand, 26901388 - 26901425
Alignment:
| Q |
478 |
ctacaatttgtttgttgttcagcaaagaaaggccaaca |
515 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26901388 |
ctacaattagtttgttgttcagcaaaaaaaggccaaca |
26901425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 515
Target Start/End: Original strand, 26943700 - 26943737
Alignment:
| Q |
478 |
ctacaatttgtttgttgttcagcaaagaaaggccaaca |
515 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26943700 |
ctacaattagtttgttgttcagcaaaaaaaggccaaca |
26943737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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