View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9922_3 (Length: 511)
Name: NF9922_3
Description: NF9922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9922_3 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 130 - 511
Target Start/End: Complemental strand, 32855953 - 32855572
Alignment:
| Q |
130 |
agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag |
229 |
Q |
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| T |
32855953 |
agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag |
32855854 |
T |
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| Q |
230 |
gtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttaattgatgtg |
329 |
Q |
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| T |
32855853 |
gtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttgattgatgtg |
32855754 |
T |
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| Q |
330 |
agcttttaaactttataatacagtctcaaagcaaatcacaattcaacaccagacacgccccggattccacttggttatgctttagttcacaaacttatat |
429 |
Q |
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| T |
32855753 |
agcttttaaactttataatacagtctcaaaacaaatcacaattcaacaccagacacgccccggattccacttggttatgctttagttcacaaacttatat |
32855654 |
T |
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| Q |
430 |
aacaatatacatgctttagtccactttataatacttgcttttatgaacataatatttttatattgatgtacaaggtttgaac |
511 |
Q |
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| T |
32855653 |
aacaatatacatgctttagtccactttataatacttgcttttatgaacataatatttttatgttggtggacaaggtttgaac |
32855572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 195 - 380
Target Start/End: Complemental strand, 32850489 - 32850285
Alignment:
| Q |
195 |
ttgttgcatttagtaacctttggccaccccaacaggtagcacttgatattttcagctggaaaggacctga--------------gtatcagaatgactaa |
280 |
Q |
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| T |
32850489 |
ttgttgcacttagtaacttttagcaaccccaacaggtagcagttggtattttcagctggaaaggacctgataatccctaaagttgtatcagcatgactaa |
32850390 |
T |
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| Q |
281 |
tgatgatttgagcatgtagag--------cagggtaactcttctcttaattgatgtgagcttttaaactttataatacagtctcaaagcaaatcacaatt |
372 |
Q |
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| T |
32850389 |
tgat---ttgagcatgtagaggcgtagagcagggtaactcttctctcaattgatgtgagcttttaaactttataatacagtctcaaaacaaatcacaatt |
32850293 |
T |
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| Q |
373 |
caacacca |
380 |
Q |
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| T |
32850292 |
caacacca |
32850285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 32856072 - 32855987
Alignment:
| Q |
11 |
cacagagtgcagaacagttacagtgctttgaagatannnnnnnnnnnnnnnncttccagctggagatattatcttagttcaaaggg |
96 |
Q |
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| T |
32856072 |
cacagagtgcagaacagttacagtgctttgaagatattttctttttgtttttcttccagctggagatattatcttagttcaaaggg |
32855987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 32850561 - 32850520
Alignment:
| Q |
131 |
gggaaaaataaaactacaagcgtgggagatgtggtcttgcac |
172 |
Q |
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| T |
32850561 |
gggaaaaataaaactacaatcgtgggagatggggtcttgcac |
32850520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 32850625 - 32850592
Alignment:
| Q |
63 |
cttccagctggagatattatcttagttcaaaggg |
96 |
Q |
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| T |
32850625 |
cttccagctggagatattatcttagttcaaaggg |
32850592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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