View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9922_4 (Length: 464)
Name: NF9922_4
Description: NF9922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9922_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 201 - 357
Target Start/End: Complemental strand, 1109169 - 1109017
Alignment:
| Q |
201 |
aatatatgctttcttcttcacatccttatacgtatttctctgcacatgatctgtagcatctgcaggaaggggttccatgccattattgatctcaatctgt |
300 |
Q |
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| T |
1109169 |
aatatatgctttcttcttcacatcgttatacatatttctctg-ac---atctgtagcatctgcaggaaggggttccatgccattattgatctcaatctgt |
1109074 |
T |
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| Q |
301 |
tcagacacattgtgaactgcaaagatcacattcatatgtctgaaccatcgttcacag |
357 |
Q |
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| T |
1109073 |
tcagacacattgtgaactgcaaagatcacattcatatgtctgaaccatcgttcacag |
1109017 |
T |
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Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 375 - 464
Target Start/End: Complemental strand, 32855661 - 32855572
Alignment:
| Q |
375 |
acttatataacaatatacatgctttagtccactttataatacttgcttttatgaacataatatttttatattgatgtacaaggtttgaac |
464 |
Q |
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| T |
32855661 |
acttatataacaatatacatgctttagtccactttataatacttgcttttatgaacataatatttttatgttggtggacaaggtttgaac |
32855572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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