View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9922_low_1 (Length: 467)
Name: NF9922_low_1
Description: NF9922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9922_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 139 - 419
Target Start/End: Original strand, 448279 - 448559
Alignment:
| Q |
139 |
ggtggttaaccatcaatttttagtaaatttcaacctcaaaacttgaattagtttcagatatcttttcaaaatttcccttgcatattaggactatcacgta |
238 |
Q |
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| T |
448279 |
ggtggttaactatcaatttttagtaaatttcaacctcaaaacttgaattagtttcagatatcgtttcaaaatttcccttgcatattaagactaccatgta |
448378 |
T |
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| Q |
239 |
actttttcgtagacctgccttcacgctaattaaacatcgtcgtaaaataacnnnnnnnnnnnnnnnngatgcaagaaatggaatagatggaagaacgaga |
338 |
Q |
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| T |
448379 |
actttttcgtagacctgccatcacgctaattaaacatcgccgtaaaataacaaaaaaaaaaaaaaaagatgcaagaaatggaatagatggaagaacgaga |
448478 |
T |
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| Q |
339 |
agattgtggtagagatggagacagagtctagacaacctacatttcccttatgnnnnnnngtgtgcgaaaatgtttcccttt |
419 |
Q |
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| T |
448479 |
agattgtggtagagattgagacagagtctagacaacctacatttcccttatgaaaaaaagtgtgcgaaaatgtttcccttt |
448559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 448135 - 448240
Alignment:
| Q |
17 |
aataagaacatacttgaattttacaatttgtgaaaacttttttgccaataattcttgagggccttttagaagccacaaatctttttaaagttgaccacaa |
116 |
Q |
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| T |
448135 |
aataagaacatacttgaattttacaatttgttaaaacttttttgccaataattcttgagggccttttagaagccacaaatctttttaaagttgaccacaa |
448234 |
T |
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| Q |
117 |
atcagt |
122 |
Q |
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|||||| |
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| T |
448235 |
atcagt |
448240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 453
Target Start/End: Original strand, 448551 - 448580
Alignment:
| Q |
424 |
tttccctttgaggcgtcctatctttcattt |
453 |
Q |
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| T |
448551 |
tttccctttgaggcgtcctatctttcattt |
448580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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