View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9922_low_6 (Length: 215)

Name: NF9922_low_6
Description: NF9922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9922_low_6
NF9922_low_6
[»] chr7 (13 HSPs)
chr7 (17-213)||(4784415-4784611)
chr7 (17-213)||(4816844-4817040)
chr7 (17-207)||(4697770-4697960)
chr7 (20-213)||(4712649-4712842)
chr7 (17-213)||(4863229-4863425)
chr7 (17-213)||(4846601-4846797)
chr7 (21-205)||(4643052-4643236)
chr7 (39-205)||(4652868-4653034)
chr7 (21-205)||(4630257-4630441)
chr7 (41-205)||(4661152-4661316)
chr7 (41-213)||(4666275-4666447)
chr7 (75-205)||(4636205-4636335)
chr7 (21-207)||(4671986-4672172)
[»] chr4 (1 HSPs)
chr4 (21-207)||(18926323-18926509)
[»] chr6 (1 HSPs)
chr6 (76-182)||(5479246-5479355)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 4784415 - 4784611
Alignment:
Q  17 ctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784415 ctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatatt 4784514  T
Q  117 gatggagttacaccagttgcgataaaacgtcttaaaccgggttctcaacaaggtgtaaacgagttcttgaatgagattgagttgctctctctgcttc 213  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  4784515 gatggagttacaccagttgcgataaaacgtcttaaaccaggttctcaacaaggtgtgaacgagttcttgaatgagattgagttgctctctcagcttc 4784611  T

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Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 4816844 - 4817040
Alignment:
Q  17 ctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4816844 ctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatatt 4816943  T
Q  117 gatggagttacaccagttgcgataaaacgtcttaaaccgggttctcaacaaggtgtaaacgagttcttgaatgagattgagttgctctctctgcttc 213  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  4816944 gatggagttacaccagttgcgataaaacgtcttaaacctggttctcaacaaggtgttaacgagttcttgaatgagattgagttgctctctcagcttc 4817040  T

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Target: chr7; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 4697770 - 4697960
Alignment:
Q  17 ctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatatt 116  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| || ||||||||||| || || |||| ||||||||| ||     
T  4697770 ctattttacaatagcggagataagagccgctacaaacaacttcgaagatatttttatcattggagttggagggtttggtaacgtgttcaaaggttacatc 4697869  T
Q  117 gatggagttacaccagttgcgataaaacgtcttaaaccgggttctcaacaaggtgtaaacgagttcttgaatgagattgagttgctctctc 207  Q
    |||| || |||||| || || ||||||||| | ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  4697870 gatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacaaggtgtaaacgagttcatgaatgaaatcgagttgctctctc 4697960  T

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Target: chr7; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 4712649 - 4712842
Alignment:
Q  20 ttttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgat 119  Q
    |||||| |||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||    
T  4712649 ttttactatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgat 4712748  T
Q  120 ggagttacaccagttgcgataaaacgtcttaaaccgggttctcaacaaggtgtaaacgagttcttgaatgagattgagttgctctctctgcttc 213  Q
    ||| | | ||| |||||||||||||||| ||||  |||||||| ||||||| |||| || ||| ||||||| || ||||||||||||| |||||    
T  4712749 ggactcatacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagttgctctctcagcttc 4712842  T

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Target: chr7; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 4863425 - 4863229
Alignment:
Q  17 ctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatatt 116  Q
    ||||||||||||| | || |||| ||| |||||||||||||| || |||||||| ||||| || ||||||||||||||||| ||||||||||||||||||    
T  4863425 ctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgtacaaaggttatatt 4863326  T
Q  117 gatggagttacaccagttgcgataaaacgtcttaaaccgggttctcaacaaggtgtaaacgagttcttgaatgagattgagttgctctctctgcttc 213  Q
    |||||||  | ||| ||||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||| || || ||||||| |||||    
T  4863325 gatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatgagatcgaattactctctcagcttc 4863229  T

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Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 4846601 - 4846797
Alignment:
Q  17 ctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatatt 116  Q
    |||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||||||||| ||     
T  4846601 ctattttacaatagcggagataagagaagctacaaacaacttcgaagatatttttatcattggagctggagggttcggcaacgtgtacaaaggttacatc 4846700  T
Q  117 gatggagttacaccagttgcgataaaacgtcttaaaccgggttctcaacaaggtgtaaacgagttcttgaatgagattgagttgctctctctgcttc 213  Q
     ||||| | ||||| |||||||||||||||| |||||||||||||| | ||||| |||| || ||| ||||||| || ||| ||||||||| |||||    
T  4846701 aatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgataaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttc 4846797  T

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Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 4643236 - 4643052
Alignment:
Q  21 tttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatg 120  Q
    |||||||| || || || ||||||||||||||||||||||| |||  |||||||||||| ||||||||||| ||||| ||||||||||||| | ||||||    
T  4643236 tttacaatcgcagagatcaaagcagctacaaacaacttcgatgatgcttttatcatcggagttggagggtttggcaacgtgtacaaaggttgtgttgatg 4643137  T
Q  121 gagttacaccagttgcgataaaacgtcttaaaccgggttctcaacaaggtgtaaacgagttcttgaatgagattgagttgctctc 205  Q
    ||   ||||  |||||| | || || || ||| |||| |||||||||||||  ||||||||| ||||||| || |||||||||||    
T  4643136 gatccacacttgttgcggttaagcgcctcaaatcgggctctcaacaaggtgccaacgagttcatgaatgaaatcgagttgctctc 4643052  T

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Target: chr7; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 4653034 - 4652868
Alignment:
Q  39 aaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcga 138  Q
    |||||||| ||||| |||||||| ||| |||| |||||||| |||||||| || ||||| |||||||||||||  || ||||||   |  || |||||||    
T  4653034 aaagcagccacaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcga 4652935  T
Q  139 taaaacgtcttaaaccgggttctcaacaaggtgtaaacgagttcttgaatgagattgagttgctctc 205  Q
    ||||||| || ||| | || |||||||||||||  ||||||||| |||||||||| ||||| |||||    
T  4652934 taaaacgcctcaaatctggctctcaacaaggtgccaacgagttcatgaatgagatcgagttactctc 4652868  T

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Target: chr7; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 4630441 - 4630257
Alignment:
Q  21 tttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatg 120  Q
    |||||||| ||||| || |||||||| ||||||||||| ||  ||  ||| ||||||||  |||||||||| || || ||||||||||||| | | ||||    
T  4630441 tttacaatcgcggagatcaaagcagccacaaacaactttgacaatgatttcatcatcggatttggagggtttgggaacgtgtacaaaggttgtgtcgatg 4630342  T
Q  121 gagttacaccagttgcgataaaacgtcttaaaccgggttctcaacaaggtgtaaacgagttcttgaatgagattgagttgctctc 205  Q
    ||   ||||| |||||||||||||| || ||| | || |||||||||||||  ||||||||| |||| || || |||||||||||    
T  4630341 gatccacacctgttgcgataaaacgcctcaaatcaggctctcaacaaggtgccaacgagttcatgaacgaaatcgagttgctctc 4630257  T

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Target: chr7; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 4661316 - 4661152
Alignment:
Q  41 agcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcgata 140  Q
    |||||| ||||| ||||| || |||  ||| ||||| || ||||||||||| ||||| ||||||||||||| | ||||||||   ||||  ||||||||     
T  4661316 agcagccacaaaaaactttgatgatgatttcatcattggagttggagggtttggcaacgtgtacaaaggttgtgttgatggatcaacacttgttgcgatt 4661217  T
Q  141 aaacgtcttaaaccgggttctcaacaaggtgtaaacgagttcttgaatgagattgagttgctctc 205  Q
    ||||| || ||| |||| |||||||||||||| ||||||||| |||| || || |||||||||||    
T  4661216 aaacgcctcaaatcgggctctcaacaaggtgtcaacgagttcatgaacgaaatcgagttgctctc 4661152  T

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Target: chr7; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 4666447 - 4666275
Alignment:
Q  41 agcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcgata 140  Q
    |||||| ||||||||||| || |||  ||| |||||||| ||||||||||| ||||| ||||||||||||| | | ||||||   ||||  ||||| |||    
T  4666447 agcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttggcaacgtgtacaaaggttgtgtcgatggatccacacttgttgccata 4666348  T
Q  141 aaacgtcttaaaccgggttctcaacaaggtgtaaacgagttcttgaatgagattgagttgctctctctgcttc 213  Q
    ||||| || ||| | || |||||||||||||  ||||||||| |||| || || || |||||||||| |||||    
T  4666347 aaacgcctcaaatcaggctctcaacaaggtgccaacgagttcatgaacgaaatcgaattgctctctcagcttc 4666275  T

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Target: chr7; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 75 - 205
Target Start/End: Complemental strand, 4636335 - 4636205
Alignment:
Q  75 atcggggttggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacgtcttaaaccgggttctcaacaaggtgtaa 174  Q
    ||||| ||||| ||||| || ||||||||||||||||  |||||||||   ||||| |||||||||||||| || |   |||| ||||||||||||| ||    
T  4636335 atcggtgttggggggtttgggaatgtgtacaaaggtttcattgatggatccacacccgttgcgataaaacgcctcaggtcgggctctcaacaaggtgcaa 4636236  T
Q  175 acgagttcttgaatgagattgagttgctctc 205  Q
    | |||||| |||| ||||| |||||||||||    
T  4636235 atgagttcatgaacgagatcgagttgctctc 4636205  T

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Target: chr7; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 4672172 - 4671986
Alignment:
Q  21 tttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatg 120  Q
    |||||||| || || || |||||||| |||||||||||||| |||  || ||||||||| ||||||||||| || ||  |||||||||||| | | ||||    
T  4672172 tttacaatcgcagagatcaaagcagccacaaacaacttcgatgatgcttctatcatcggagttggagggtttggaaacctgtacaaaggttgtgtcgatg 4672073  T
Q  121 gagttacaccagttgcgataaaacgtcttaaaccgggttctcaacaaggtgtaaacgagttcttgaatgagattgagttgctctctc 207  Q
    ||   ||||  ||||| |||||||| || ||| |||| ||||| |||||||  ||||||||| |||| || || ||||| |||||||    
T  4672072 gatccacacttgttgccataaaacggctcaaatcgggctctcagcaaggtgccaacgagttcatgaacgaaatcgagttactctctc 4671986  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 18926323 - 18926509
Alignment:
Q  21 tttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatg 120  Q
    |||||||| || || ||||||||||| ||||| ||||| || |||  ||| |||||||| ||||||||||| ||||| ||||| |||||||  || |||     
T  18926323 tttacaattgcagagataaaagcagccacaaataactttgatgatgatttaatcatcggagttggagggtttggcaacgtgtataaaggtttcatcgata 18926422  T
Q  121 gagttacaccagttgcgataaaacgtcttaaaccgggttctcaacaaggtgtaaacgagttcttgaatgagattgagttgctctctc 207  Q
     |   ||||| ||||| ||||||||||| ||||| || ||||||||||| |  ||||||||| |||||||||| |||||||||||||    
T  18926423 aatccacacccgttgcaataaaacgtctcaaaccaggctctcaacaaggggccaacgagttcatgaatgagatcgagttgctctctc 18926509  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 5479246 - 5479355
Alignment:
Q  76 tcggggttggagggttcggcaatgtgtacaaaggttatattga---tggagttacaccagttgcgataaaacgtcttaaaccgggttctcaacaaggtgt 172  Q
    |||| |||||||| |||||| ||||||||||||| || |||||   |||    ||||  ||||| |||||||| |||||||||||||| ||||||||||     
T  5479246 tcggagttggaggattcggccatgtgtacaaaggctacattgacaatggttcaacacaggttgcaataaaacggcttaaaccgggttcacaacaaggtga 5479345  T
Q  173 aaacgagttc 182  Q
    ||| ||||||    
T  5479346 aaatgagttc 5479355  T

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