View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9923_10 (Length: 357)

Name: NF9923_10
Description: NF9923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9923_10
NF9923_10
[»] chr2 (12 HSPs)
chr2 (1-212)||(27645179-27645389)
chr2 (140-212)||(27645499-27645572)
chr2 (289-342)||(27645499-27645552)
chr2 (144-212)||(27554426-27554495)
chr2 (145-212)||(27554734-27554802)
chr2 (293-342)||(27554446-27554495)
chr2 (296-342)||(27554300-27554346)
chr2 (144-212)||(27554582-27554651)
chr2 (293-342)||(27554602-27554651)
chr2 (287-342)||(27645314-27645369)
chr2 (235-278)||(27645419-27645461)
chr2 (294-342)||(27554754-27554802)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 27645179 - 27645389
Alignment:
Q  1 caatgaaaaataagtaaagtcttacaaaaataatatctaaaattcaaattcagtttatctgtggttaatccaaaatttggtccaaaaatattttttgcgt 100  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  27645179 caatgaaaaataagtaaagt-tgacaaaaataatatctaaaattcaaattcagtttatctgtggttaattcaaaattcggttcaaaaatattttttgcgt 27645277  T
Q  101 gtgaattcttaccccttaagatattcctttnnnnnnnnngattttcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttc 199  Q
    ||||||||||||||||||| ||||| ||||         |||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27645278 gtgaattcttaccccttaaaatatttcttt-aaaaaaaagatttttattgaatgaaaaattaccatatacattatgaatacctttcgtatgattttgttc 27645376  T
Q  200 aaaggaggaaaag 212  Q
    |||||||||||||    
T  27645377 aaaggaggaaaag 27645389  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 27645499 - 27645572
Alignment:
Q  140 gattttcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 212  Q
    |||||||||||||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||||||    
T  27645499 gattttcattaaatgaaaaattaccatatacatttcgaataccttttgtatgattttgttcaaaggaggaaaag 27645572  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 27645499 - 27645552
Alignment:
Q  289 gattttcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 342  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27645499 gattttcattaaatgaaaaattaccatatacatttcgaataccttttgtatgat 27645552  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 27554495 - 27554426
Alignment:
Q  144 ttcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 212  Q
    ||||||||||||||||||| |||| |||||  |||||||||| |||||||||||||||||||||||||||    
T  27554495 ttcattaaatgaaaaattaacatatacatttggaataccttttgtatgattttgttcaaaggaggaaaag 27554426  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 27554802 - 27554734
Alignment:
Q  145 tcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 212  Q
    ||||||||| |||||||| |||| |||||| |||||| ||| |||||||||||||||||||||||||||    
T  27554802 tcattaaataaaaaattatcatatacattacgaatactttttgtatgattttgttcaaaggaggaaaag 27554734  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 27554495 - 27554446
Alignment:
Q  293 ttcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 342  Q
    |||||||||||||||| || ||||||||||| ||||||||||||||||||    
T  27554495 ttcattaaatgaaaaattaacatatacatttggaataccttttgtatgat 27554446  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 27554346 - 27554300
Alignment:
Q  296 attaaatgaaaaactaccatatacatttcgaataccttttgtatgat 342  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  27554346 attaaatgaaaaattaccaaatacatttcaaataccttttgtatgat 27554300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 27554651 - 27554582
Alignment:
Q  144 ttcattaaatgaaaaattaccataac-attatgaatacctttcgtatgattttgttcaaaggaggaaaag 212  Q
    ||||||||||||||||||| ||||   |||  |||||||||| ||||||||||||| |||||||||||||    
T  27554651 ttcattaaatgaaaaattatcatatttatttcgaataccttttgtatgattttgtttaaaggaggaaaag 27554582  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 27554651 - 27554602
Alignment:
Q  293 ttcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 342  Q
    |||||||||||||||| || |||||  |||||||||||||||||||||||    
T  27554651 ttcattaaatgaaaaattatcatatttatttcgaataccttttgtatgat 27554602  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 27645314 - 27645369
Alignment:
Q  287 aagattttcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 342  Q
    |||||||| ||| ||||||||| |||||||||||||  |||||||||| |||||||    
T  27645314 aagatttttattgaatgaaaaattaccatatacattatgaatacctttcgtatgat 27645369  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 27645419 - 27645461
Alignment:
Q  235 gtgtgtgaattctttactccttaagatatttatttaatgatagt 278  Q
    |||||||||||||| |||| ||||||||||||||||||||||||    
T  27645419 gtgtgtgaattctt-actctttaagatatttatttaatgatagt 27645461  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 27554802 - 27554754
Alignment:
Q  294 tcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 342  Q
    ||||||||| ||||| || |||||||||| ||||||| |||||||||||    
T  27554802 tcattaaataaaaaattatcatatacattacgaatactttttgtatgat 27554754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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