View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9923_4 (Length: 547)
Name: NF9923_4
Description: NF9923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9923_4 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 305 - 547
Target Start/End: Original strand, 38709008 - 38709250
Alignment:
| Q |
305 |
atactaactatgttatattattgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatata |
404 |
Q |
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| T |
38709008 |
atactaactatgttatattattgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatata |
38709107 |
T |
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| Q |
405 |
aaggaaaaaattgatgagaacacaactgtatacattgatgttggtcctaagggaagtgacttgtcataccatgtggaaaagaatggagagattgttaatg |
504 |
Q |
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| T |
38709108 |
aaggaaaaaattgatgagaacacaactgtatacattgatgttggtcctaagggaagtgacttgtcataccgtgtggaaaagaatggagagattgttaatg |
38709207 |
T |
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| Q |
505 |
ctgaaactgggatgaagtcagatattttgatacagataccaac |
547 |
Q |
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| T |
38709208 |
ctgaaactggggtgaagtcagatattttgatacagataccaac |
38709250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 66 - 236
Target Start/End: Original strand, 38708769 - 38708939
Alignment:
| Q |
66 |
tacgtgttttgtttcagtcattgcaaacttgttcattttgaaattggtccttgaaaatatatcatattttgctttaggcctgataatattcattttaacc |
165 |
Q |
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| T |
38708769 |
tacgtgttttgtttcggtcattgcaaacttgttcattttgaaattggtccttgaaaatatatcatattttgctttaggcctgataatattcattttaacc |
38708868 |
T |
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| Q |
166 |
ttggaggggctaaaatcaaatattctacatattctggcctacaactgcaagtaccaaataaaacattttac |
236 |
Q |
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| T |
38708869 |
ctggagaggctaaaatcgaatattctacatattctggcctacaactgcaagtaccaaataaaacattttac |
38708939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 307 - 546
Target Start/End: Original strand, 10047050 - 10047286
Alignment:
| Q |
307 |
actaactatgttatattattgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatataaa |
406 |
Q |
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| T |
10047050 |
actaactatgttttattgttgtgtaggtgtacggtgctagaccaatttg---gtggcttgagaagaatgtggtgacagagctatctatgatgcttataag |
10047146 |
T |
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| Q |
407 |
ggaaaaaattgatgagaacacaactgtatacattgatgttggtcctaagggaagtgacttgtcataccatgtggaaaagaatggagagattgttaatgct |
506 |
Q |
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| T |
10047147 |
ggaagaaattgatgagaatacaactgtttgcattgatgctggtcctaagggaagtgatttggtataccgtgtcgaaaagaatggagggattgtaaatgct |
10047246 |
T |
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| Q |
507 |
gaaactgggatgaagtcagatattttgatacagataccaa |
546 |
Q |
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| T |
10047247 |
gaaactggggtgaagtcagatattttgattcagataccaa |
10047286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 325 - 544
Target Start/End: Original strand, 45468757 - 45468976
Alignment:
| Q |
325 |
ttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatataaaggaaaaaattgatgagaa |
424 |
Q |
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| T |
45468757 |
ttgtataggtgtatggagctagaccaatcagaagatggctagagaagaaggtggtgacagaactctctaggatgctcataagagaagaaattgatgagaa |
45468856 |
T |
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| Q |
425 |
cacaactgtatacattgatgttggtcctaagggaagtgacttgtcataccatgtggaaaagaatggagagattgttaatgctgaaactgggatgaagtca |
524 |
Q |
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| T |
45468857 |
tacaacggtttacatagatgctggtcctaagggaagcgatttggcataccgtgtagaaaagaatggagggattgttaatgctgaaactggggtgaagtct |
45468956 |
T |
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| Q |
525 |
gatattttgatacagatacc |
544 |
Q |
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| T |
45468957 |
gatatattgattcagatacc |
45468976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 328 - 542
Target Start/End: Complemental strand, 739747 - 739533
Alignment:
| Q |
328 |
tgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatataaaggaaaaaattgatgagaacac |
427 |
Q |
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| T |
739747 |
tgtaggtgtatggtgctagatcaattagaaggtggcttgagaagaaggtagtgacagagctgtctaggatgcttataagggaagaaattgatgaaaatac |
739648 |
T |
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| Q |
428 |
aactgtatacattgatgttggtcctaagggaagtgacttgtcataccatgtggaaaagaatggagagattgttaatgctgaaactgggatgaagtcagat |
527 |
Q |
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||| || ||||| |||| || |||||| ||||||| ||| | ||| || ||||| | || |||||||||||||||||||| ||| ||||||| ||| |
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| T |
739647 |
aacagtttacatcgatgctgatcctaatggaagtggtttggtacaccgtgcagaaaatagtgaagagattgttaatgctgaaatcggggtgaagtcggat |
739548 |
T |
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| Q |
528 |
attttgatacagata |
542 |
Q |
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| T |
739547 |
attttgattcagata |
739533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 325 - 451
Target Start/End: Complemental strand, 741882 - 741757
Alignment:
| Q |
325 |
ttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatataaaggaaaaaattgatgagaa |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | |||| ||||| | |||| || | || |||||||||||| |
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| T |
741882 |
ttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaaaaaggtggtgacagtgctgtctatgct-tatacaaggaaagtaattgatgagaa |
741784 |
T |
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| Q |
425 |
cacaactgtatacattgatgttggtcc |
451 |
Q |
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| T |
741783 |
tacaacggtttacattgatgttggtcc |
741757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 42449025 - 42448972
Alignment:
| Q |
328 |
tgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtga |
381 |
Q |
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| T |
42449025 |
tgtaggtgtatggtgctagaccaattagaagctggcttgagaaaaaggtggtga |
42448972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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