View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9923_5 (Length: 465)
Name: NF9923_5
Description: NF9923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9923_5 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 35968881 - 35969283
Alignment:
| Q |
1 |
aaactcttactttctcttttcttcttaacaaccttgttgatgctgttgttcttcttaggtaacaaagtttgtgtttgtactaggttgttttcatcttctg |
100 |
Q |
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| T |
35968881 |
aaactcttactttctcttttcttcttaacaaccttgttgatattgttgttcttcttaggtaacaaagtttgtgtttgtactaggttgttttcatcttctg |
35968980 |
T |
|
| Q |
101 |
agtctgttacttctttacctgaaagaatagtttgaagctttgaaggaatgatattaagaacagagtctggtgaaagagaatcatggttaaaacatgcaat |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35968981 |
agtctgttacttctttacctnaaagaatagtttgaagctttgaaggaatgatattaagaacagagtctggtgaaagagaatcatggttaaaacatgcaat |
35969080 |
T |
|
| Q |
201 |
agattggtcactcatggatctgttatgaacagttcggatccgtgtgagttttggtccttcatatgatgtttcattgttctgagaatctttaagattttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35969081 |
agattggtcactcatggatctgttatgaacagttcggatccgtgtgagttttggtccttcatatgatgtttcattgttctgagaatctttaagattttgt |
35969180 |
T |
|
| Q |
301 |
tcagaacacgttgatgttactgatgaagttgtgtttctgttcaaaatgttaaactgaaaccagaaagaatcaaagagcttcaagatagattcatgttcca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35969181 |
tcagaacacgttgatgttactgatgaagttgtgtttctgttcaaaatgttaaactgaaaccagaaagaatcaaagagcttcaagatagattcatgttcca |
35969280 |
T |
|
| Q |
401 |
tat |
403 |
Q |
| |
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||| |
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| T |
35969281 |
tat |
35969283 |
T |
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