View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9924_high_13 (Length: 238)
Name: NF9924_high_13
Description: NF9924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9924_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 47096055 - 47096279
Alignment:
| Q |
15 |
atatataactcaagcatctcctaatagaggagattataattttgtccttaattgaaaattactattatttacttacaatatttaaatatcattcatttat |
114 |
Q |
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| T |
47096055 |
atatataactcaagcatctcctaatagaggagattataattttgtccttaattgaaaattactattatttacttacaatatttaaatatcattcatttat |
47096154 |
T |
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| Q |
115 |
ttaccaaaattaattgaaaaaatatttgactgacaattttacagctacattatattttataatttttctaaa-nnnnnnnggataaaattatatgagctt |
213 |
Q |
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| T |
47096155 |
ttaccaaaattaattgaaaaaatatttgactgacaattttacagctacattttattttataatttttctaaatattttttggataaaattatatgagctt |
47096254 |
T |
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| Q |
214 |
atagttctatatgattgactattct |
238 |
Q |
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| T |
47096255 |
atagttctatatgattgactattct |
47096279 |
T |
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