View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9924_high_2 (Length: 377)
Name: NF9924_high_2
Description: NF9924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9924_high_2 |
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| [»] scaffold0565 (1 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 7614431 - 7614793
Alignment:
| Q |
1 |
aattacactgaattatgtgannnnnnnaaattattaactgtgtcggtgtctgtgtcgtatctgatatctgtgtccgtatccgtgtttcatagagacaaaa |
100 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
7614431 |
aattatactgaattatgtgattttcttaaattattaactgtgtcggtgtctgtgtcgtatctgatatttgtgtccgtatccgtgtttcacagagacaaaa |
7614530 |
T |
|
| Q |
101 |
accgaannnnnnnnn-ataaggactaaaatcaacatttgattttaccttaatttatttttatctttgtctgataataaccatatgaatatagtttctaaa |
199 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7614531 |
accgaattttttttttataaggactaaaatcaacatttgattttaccttaatttatttttatctttgtctgatattaaccatatgaatatagtttctaaa |
7614630 |
T |
|
| Q |
200 |
attgttcattatttcaattttgtagggagatcgtattagttttagtgggcaagtacaaaactaccaaaagacagtgtcccaagtggtaaatttgcttgga |
299 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7614631 |
attgttcattatttcaactttgtagggagatcgtattagttttagtgggcaagtacaaaactaccaaaagacagtgtcccaagtggtaaatttgcttgga |
7614730 |
T |
|
| Q |
300 |
gatgaggatacagcttcaaattatcttagcaaatgcatctattccattggattgggtagcaat |
362 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7614731 |
gatgaggatacagcttcaaattatcttagcaaatgcatctattccattggattgggtagcaat |
7614793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 135 - 362
Target Start/End: Original strand, 8491695 - 8491921
Alignment:
| Q |
135 |
tttgattttaccttaatttatttttatctttgtctgataataaccatatgaata-tagtttctaaaattgttcattatttcaattttgtagggagatcgt |
233 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||| |||| |||| |||||| || || |||||| ||||||| |||||||||| |||||||||||||||| |
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| T |
8491695 |
tttgattttaccataatttcttttaatctttgtttgatgataa--atatgattaataatttctataattgttaattatttcaactttgtagggagatcgt |
8491792 |
T |
|
| Q |
234 |
attagttttagtgggcaagtacaaaactaccaaaagacagtgtcccaagtggtaaatttgcttggagatgaggatacagcttcaaattatcttagcaaat |
333 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
8491793 |
attagttttagtggtcaagtacaaaactaccaaaagacagtgtcccaagtgataaatttgcttggagattagaatacagcttcaaattatcttagcaaat |
8491892 |
T |
|
| Q |
334 |
gcatctattccattggattgggtagcaat |
362 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
8491893 |
gcatctattccattggattgggtagcaat |
8491921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 33283264 - 33283302
Alignment:
| Q |
46 |
gtgtctgtgtcgtatctgatatctgtgtccgtatccgtg |
84 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| |
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| T |
33283264 |
gtgtctgtgtcgtatctgatgtccgtgtccgtatccgtg |
33283302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 4560 - 4415
Alignment:
| Q |
217 |
ttttgtagggagatcgtattagttttagtgggcaagtacaaaactaccaaaagacagtgtcccaagtggtaaatttgcttggagatgaggatacagcttc |
316 |
Q |
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||||||||||| | || ||||||||||| |||||||| ||||| ||||||| ||||||||||||| ||||||||| ||||||||||| | || ||| | |
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| T |
4560 |
ttttgtagggacaacgaattagttttagagggcaagtgcaaaattaccaaaggacagtgtcccaattggtaaattattttggagatgagaacactgctgc |
4461 |
T |
|
| Q |
317 |
aaattatcttagcaaatgcatctattccattggattgggtagcaat |
362 |
Q |
| |
|
||||||||||||||| ||||| ||| | |||||||||||||||||| |
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| T |
4460 |
aaattatcttagcaagtgcatttatacaattggattgggtagcaat |
4415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 3951590 - 3951645
Alignment:
| Q |
38 |
ctgtgtcggtgtctgtgtcgtatctgatatctgtgtccgtatccgtgtttcataga |
93 |
Q |
| |
|
||||||||||||| |||||||||||| | || ||||||||||||||| |||||||| |
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|
| T |
3951590 |
ctgtgtcggtgtccgtgtcgtatctggtgtccgtgtccgtatccgtgcttcataga |
3951645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 4157166 - 4157099
Alignment:
| Q |
28 |
aaattattaactgtgtcggtgtctgtgtcgtatctgatatctgtgtccgtatccgtgtttcatagaga |
95 |
Q |
| |
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||||||||| |||||| ||||||||||||| |||| | || ||||||||||||||| |||||||||| |
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| T |
4157166 |
aaattattagttgtgtcagtgtctgtgtcgtgtctggtgtccgtgtccgtatccgtgcttcatagaga |
4157099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 19482664 - 19482612
Alignment:
| Q |
40 |
gtgtcggtgtctgtgtcgtatctgatatctgtgtccgtatccgtgtttcatag |
92 |
Q |
| |
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||||| ||||||||||||| |||| | ||||||| |||||||||| ||||||| |
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| T |
19482664 |
gtgtcagtgtctgtgtcgtgtctggtgtctgtgttcgtatccgtgcttcatag |
19482612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 5027 - 5065
Alignment:
| Q |
46 |
gtgtctgtgtcgtatctgatatctgtgtccgtatccgtg |
84 |
Q |
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| T |
5027 |
gtgtctgtgtcgtatctgatgtccgtgtccgtatccgtg |
5065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 39101225 - 39101265
Alignment:
| Q |
28 |
aaattattaactgtgtcggtgtctgtgtcgtatctgatatc |
68 |
Q |
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| T |
39101225 |
aaattattatatgtgtcggtgtctgtgtcgtgtctgatatc |
39101265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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