View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9924_high_3 (Length: 346)
Name: NF9924_high_3
Description: NF9924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9924_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 330
Target Start/End: Original strand, 14748199 - 14748517
Alignment:
| Q |
12 |
cagagaacacataactgcatagaagggaaaaacattcatggttttacaaagtttagagggctaattaattattaaaacataactgcatcataaaactgac |
111 |
Q |
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| T |
14748199 |
cagagaacacataactgcatagaagggaaaaacattcatggttttacaaagtttagagggctaattaattattaaaacataactgcatcataaaactgac |
14748298 |
T |
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| Q |
112 |
ttaatcgcagcagtatcggaaattaacatagatattaaaaataatattgagagaggacatacaaaatattgatgacagagttcagtcgaatgatgcgtct |
211 |
Q |
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| T |
14748299 |
ttaatcgcagcagtatcggaaattaacatagatattaaaaataatattgagagaggacatacaaaatattgatgacagagttcagtcgaatgatgcgtct |
14748398 |
T |
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| Q |
212 |
tcgggagagaacagttaccctatgtggataaccaaatgtagcaaacaattgaaacaaatttcctctaatgttgaaacaaattttcctgtatatactttcc |
311 |
Q |
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| T |
14748399 |
tcgggagagaatagttaccctatgtggataaccaaatgtagcaaacaattgaaacaaatttcctctaatgttgaaacaaattttcctgtatatactttcc |
14748498 |
T |
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| Q |
312 |
aatgttgaaaccaattttc |
330 |
Q |
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| T |
14748499 |
aatgttgaaaccaattttc |
14748517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 14748499 - 14748548
Alignment:
| Q |
278 |
aatgttgaaacaaattttcctgtatatactttccaatgttgaaaccaatt |
327 |
Q |
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| T |
14748499 |
aatgttgaaaccaattttcctgtatatactttctaatgttgaaaacaatt |
14748548 |
T |
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