View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9924_high_4 (Length: 337)
Name: NF9924_high_4
Description: NF9924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9924_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 30706826 - 30707014
Alignment:
| Q |
17 |
cagagagatctgaaccaaaacgccagtgaaccaccctaaacccaccgctccgaagccccttgtggaatacgacagcgagctggagagaggtggtgcggag |
116 |
Q |
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| T |
30706826 |
cagagagatctgaaccaaaacgccagtgaaccaccctaaacccaccgctccgaagccccttgtggaatacgacggcgagctggagagaggtggtgcggag |
30706925 |
T |
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| Q |
117 |
aaccaatgttctcgtcgcgccaccaccggaaaaggctacatcttgaaagagaagagtttggattttggggttttgagggtagcgaaggg |
205 |
Q |
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| T |
30706926 |
aaccaatgttctcgtcgcaccaccgccggcgaaggctacatcttgaaagagaagagtttggattttggggttttgaaggtagcgaaggg |
30707014 |
T |
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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 5231332 - 5231504
Alignment:
| Q |
21 |
gagatctgaaccaaaacgccagtgaaccaccctaaacccaccgctccgaa--gccccttgtggaatacgacagcgagctggagagaggtggtgcggagaa |
118 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||| ||||||| ||||||||||||| |||| |||||| ||| |||||||||||| |||| |
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| T |
5231332 |
gagatctgaaccaaaacgccggtgaaccaccttaaacccacgactccgaattgccccttgtggaactcgacggcgagcaggaaagaggtggtgcgaagaa |
5231431 |
T |
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| Q |
119 |
ccaatgttctcgtcgcgccaccaccggaaaaggctacatcttgaaagagaagagtttggattttggggttttga |
192 |
Q |
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|||| ||||||||||||||||| ||| || ||||||| | ||| |||||||||||||||||||| |||||| |
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| T |
5231432 |
ccaacgttctcgtcgcgccaccgtcggcggagtctacatc-taaaaaagaagagtttggattttgggattttga |
5231504 |
T |
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