View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9924_low_12 (Length: 239)
Name: NF9924_low_12
Description: NF9924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9924_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30707659 - 30707881
Alignment:
| Q |
1 |
aagaacttcaaagaacgaaattatagtataaagaaccaaatttaaaagtactacattttccaattgggaaactcttgtcacatttgaagccagcaccttt |
100 |
Q |
| |
|
||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30707659 |
aagaatttcaaagaacaaagttatagtataaagaaccaaatttaaaagtactacattttccaattgggaaactcttgtcacatttgaagccagcaccttt |
30707758 |
T |
|
| Q |
101 |
cttatttccataacctgggtaaaaatgttgataaaaagtcacctcttcaataaatagtaatttctcattttctgccagattcttgatattccagttacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30707759 |
cttatttccataacctgggtaaaaatgttgataaaaagtcacctcttcaataaatagtaatttctcattttctgccagattcttgatattccagttacta |
30707858 |
T |
|
| Q |
201 |
aaaggatgggctgttttgtgagt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
30707859 |
aaaggatgggctgttttgtgagt |
30707881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 30726763 - 30726945
Alignment:
| Q |
38 |
aaatttaaaagtactacattttccaattgggaaactcttgtcacatttgaagccagcacctttcttatttccataacctgggtaaaaatgttgataaaaa |
137 |
Q |
| |
|
|||||||||||||||||| | ||| || | |||||||| ||||||| | || |||||| | |||||| |||||||| || ||| ||||| |||| |
|
|
| T |
30726763 |
aaatttaaaagtactacactctccgatggtgaaactctgaccacatttcgaacccgcacctcttttatttatgtaacctggatacaaaacttgatgaaaa |
30726862 |
T |
|
| Q |
138 |
gtcacctcttcaataaatagtaatttctcattttctgccagattcttgatattccagttactaaaaggatgggctgttttgtg |
220 |
Q |
| |
|
||| |||||||||||| ||| | |||||||||||| |||||||||||||||||||||||| |||||| | ||||||||| |
|
|
| T |
30726863 |
tccacttcttcaataaatgataaatcctcattttctgcaagattcttgatattccagttactataaggatatgatgttttgtg |
30726945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University