View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9924_low_14 (Length: 205)
Name: NF9924_low_14
Description: NF9924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9924_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 38081891 - 38081725
Alignment:
| Q |
17 |
actaactggtcttgagagtaataattatgttatccaaaagatgtctagactttaaatcttctaatgaacataagcactcccaacttacatacatttttgt |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38081891 |
actaaccggtcttgagagtaataattatgttatccaaaagatgtctagactttaaatcttctaatgaacataagcactcccaac----atacatttttgt |
38081796 |
T |
|
| Q |
117 |
ttctctttcatattactcttgttgtacaaactgcttccactctgatcaacaatcaatatcaggagtttttc |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38081795 |
ttctctttcatattactcttgttgtacaaactgcttccactctgatcaacaatcaatatcaggagtttttc |
38081725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University